require(lightgbm) require(Matrix) context("testing lgb.Dataset functionality") data(agaricus.test, package = "lightgbm") test_data <- agaricus.test$data[1L:100L, ] test_label <- agaricus.test$label[1L:100L] test_that("lgb.Dataset: basic construction, saving, loading", { # from sparse matrix dtest1 <- lgb.Dataset(test_data, label = test_label) # from dense matrix dtest2 <- lgb.Dataset(as.matrix(test_data), label = test_label) expect_equal(getinfo(dtest1, "label"), getinfo(dtest2, "label")) # save to a local file tmp_file <- tempfile("lgb.Dataset_") lgb.Dataset.save(dtest1, tmp_file) # read from a local file dtest3 <- lgb.Dataset(tmp_file) lgb.Dataset.construct(dtest3) unlink(tmp_file) expect_equal(getinfo(dtest1, "label"), getinfo(dtest3, "label")) }) test_that("lgb.Dataset: getinfo & setinfo", { dtest <- lgb.Dataset(test_data) dtest$construct() setinfo(dtest, "label", test_label) labels <- getinfo(dtest, "label") expect_equal(test_label, getinfo(dtest, "label")) expect_true(length(getinfo(dtest, "weight")) == 0L) expect_true(length(getinfo(dtest, "init_score")) == 0L) # any other label should error expect_error(setinfo(dtest, "asdf", test_label)) }) test_that("lgb.Dataset: slice, dim", { dtest <- lgb.Dataset(test_data, label = test_label) lgb.Dataset.construct(dtest) expect_equal(dim(dtest), dim(test_data)) dsub1 <- slice(dtest, seq_len(42L)) lgb.Dataset.construct(dsub1) expect_equal(nrow(dsub1), 42L) expect_equal(ncol(dsub1), ncol(test_data)) }) test_that("lgb.Dataset: colnames", { dtest <- lgb.Dataset(test_data, label = test_label) expect_equal(colnames(dtest), colnames(test_data)) lgb.Dataset.construct(dtest) expect_equal(colnames(dtest), colnames(test_data)) expect_error({ colnames(dtest) <- "asdf" }) new_names <- make.names(seq_len(ncol(test_data))) expect_silent(colnames(dtest) <- new_names) expect_equal(colnames(dtest), new_names) }) test_that("lgb.Dataset: nrow is correct for a very sparse matrix", { nr <- 1000L x <- Matrix::rsparsematrix(nr, 100L, density = 0.0005) # we want it very sparse, so that last rows are empty expect_lt(max(x@i), nr) dtest <- lgb.Dataset(x) expect_equal(dim(dtest), dim(x)) }) test_that("lgb.Dataset: Dataset should be able to construct from matrix and return non-null handle", { rawData <- matrix(runif(1000L), ncol = 10L) handle <- NA_real_ ref_handle <- NULL handle <- lightgbm:::lgb.call( "LGBM_DatasetCreateFromMat_R" , ret = handle , rawData , nrow(rawData) , ncol(rawData) , lightgbm:::lgb.params2str(params = list()) , ref_handle ) expect_false(is.na(handle)) }) test_that("lgb.Dataset$setinfo() should convert 'group' to integer", { ds <- lgb.Dataset( data = matrix(rnorm(100L), nrow = 50L, ncol = 2L) , label = sample(c(0L, 1L), size = 50L, replace = TRUE) ) ds$construct() current_group <- ds$getinfo("group") expect_null(current_group) group_as_numeric <- rep(25.0, 2L) ds$setinfo("group", group_as_numeric) expect_identical(ds$getinfo("group"), as.integer(group_as_numeric)) }) test_that("lgb.Dataset should throw an error if 'reference' is provided but of the wrong format", { data(agaricus.test, package = "lightgbm") test_data <- agaricus.test$data[1L:100L, ] test_label <- agaricus.test$label[1L:100L] # Try to trick lgb.Dataset() into accepting bad input expect_error({ dtest <- lgb.Dataset( data = test_data , label = test_label , reference = data.frame(x = seq_len(10L), y = seq_len(10L)) ) }, regexp = "reference must be a") }) test_that("Dataset$new() should throw an error if 'predictor' is provided but of the wrong format", { data(agaricus.test, package = "lightgbm") test_data <- agaricus.test$data[1L:100L, ] test_label <- agaricus.test$label[1L:100L] expect_error({ dtest <- Dataset$new( data = test_data , label = test_label , predictor = data.frame(x = seq_len(10L), y = seq_len(10L)) ) }, regexp = "predictor must be a", fixed = TRUE) })