context("lgb.prepare_rules()") test_that("lgb.prepare_rules() rejects inputs that are not a data.table or data.frame", { bad_inputs <- list( matrix(1.0:10.0, 2L, 5L) , TRUE , c("a", "b") , NA , 10L , lgb.Dataset( data = matrix(1.0:10.0, 2L, 5L) , params = list() ) ) for (bad_input in bad_inputs) { expect_error({ conversion_result <- lgb.prepare_rules(bad_input) }, regexp = "lgb.prepare_rules: you provided", fixed = TRUE) } }) test_that("lgb.prepare_rules() should work correctly for a dataset with only character columns", { testDF <- data.frame( col1 = c("a", "b", "c") , col2 = c("green", "green", "red") , stringsAsFactors = FALSE ) testDT <- data.table::as.data.table(testDF) for (input_data in list(testDF, testDT)) { conversion_result <- lgb.prepare_rules(input_data) # dataset should have been converted to numeric converted_dataset <- conversion_result[["data"]] expect_identical(class(input_data), class(converted_dataset)) expect_identical(class(converted_dataset[["col1"]]), "numeric") expect_identical(class(converted_dataset[["col2"]]), "numeric") expect_identical(converted_dataset[["col1"]], c(1.0, 2.0, 3.0)) expect_identical(converted_dataset[["col2"]], c(1.0, 1.0, 2.0)) # rules should be returned and correct rules <- conversion_result$rules expect_is(rules, "list") expect_length(rules, ncol(input_data)) expect_identical(rules[["col1"]], c("a" = 1.0, "b" = 2.0, "c" = 3.0)) expect_identical(rules[["col2"]], c("green" = 1.0, "red" = 2.0)) } }) test_that("lgb.prepare_rules() should work correctly for a dataset with only factor columns", { testDF <- data.frame( col1 = as.factor(c("a", "b", "c")) , col2 = as.factor(c("green", "green", "red")) , stringsAsFactors = FALSE ) testDT <- data.table::as.data.table(testDF) for (input_data in list(testDF, testDT)) { conversion_result <- lgb.prepare_rules(input_data) # dataset should have been converted to numeric converted_dataset <- conversion_result[["data"]] expect_identical(class(input_data), class(converted_dataset)) expect_identical(class(converted_dataset[["col1"]]), "numeric") expect_identical(class(converted_dataset[["col2"]]), "numeric") expect_identical(converted_dataset[["col1"]], c(1.0, 2.0, 3.0)) expect_identical(converted_dataset[["col2"]], c(1.0, 1.0, 2.0)) # rules should be returned and correct rules <- conversion_result$rules expect_is(rules, "list") expect_length(rules, ncol(input_data)) expect_identical(rules[["col1"]], c("a" = 1.0, "b" = 2.0, "c" = 3.0)) expect_identical(rules[["col2"]], c("green" = 1.0, "red" = 2.0)) } }) test_that("lgb.prepare_rules() should not change a dataset with only numeric columns", { testDF <- data.frame( col1 = 11.0:15.0 , col2 = 16.0:20.0 , stringsAsFactors = FALSE ) testDT <- data.table::as.data.table(testDF) for (input_data in list(testDF, testDT)) { conversion_result <- lgb.prepare_rules(input_data) # dataset should have been converted to numeric converted_dataset <- conversion_result[["data"]] expect_identical(converted_dataset, input_data) # rules should be returned and correct rules <- conversion_result$rules expect_identical(rules, list()) } }) test_that("lgb.prepare_rules() should work correctly for a dataset with numeric, factor, and character columns", { testDF <- data.frame( character_col = c("a", "b", "c") , numeric_col = c(1.0, 9.0, 10.0) , factor_col = as.factor(c("n", "n", "y")) , stringsAsFactors = FALSE ) testDT <- data.table::as.data.table(testDF) for (input_data in list(testDF, testDT)) { conversion_result <- lgb.prepare_rules(input_data) # dataset should have been converted to numeric converted_dataset <- conversion_result[["data"]] expect_identical(class(input_data), class(converted_dataset)) expect_identical(class(converted_dataset[["character_col"]]), "numeric") expect_identical(class(converted_dataset[["numeric_col"]]), "numeric") expect_identical(class(converted_dataset[["factor_col"]]), "numeric") expect_identical(converted_dataset[["character_col"]], c(1.0, 2.0, 3.0)) expect_identical(converted_dataset[["numeric_col"]], c(1.0, 9.0, 10.0)) expect_identical(converted_dataset[["factor_col"]], c(1.0, 1.0, 2.0)) # rules should be returned and correct rules <- conversion_result$rules expect_is(rules, "list") expect_length(rules, 2L) expect_identical(rules[["character_col"]], c("a" = 1.0, "b" = 2.0, "c" = 3.0)) expect_identical(rules[["factor_col"]], c("n" = 1.0, "y" = 2.0)) } }) test_that("lgb.prepare_rules() should work correctly for a dataset with missing values", { testDF <- data.frame( character_col = c("a", NA_character_, "c") , na_col = rep(NA, 3L) , na_real_col = rep(NA_real_, 3L) , na_int_col = rep(NA_integer_, 3L) , na_character_col = rep(NA_character_, 3L) , numeric_col = c(1.0, 9.0, NA_real_) , factor_col = as.factor(c("n", "n", "y")) , integer_col = c(1L, 9L, NA_integer_) , stringsAsFactors = FALSE ) testDT <- data.table::as.data.table(testDF) for (input_data in list(testDF, testDT)) { conversion_result <- lgb.prepare_rules(input_data) # dataset should have been converted to numeric converted_dataset <- conversion_result[["data"]] expect_identical(class(input_data), class(converted_dataset)) expect_identical(class(converted_dataset[["character_col"]]), "numeric") expect_identical(converted_dataset[["character_col"]], c(1.0, NA_real_, 2.0)) expect_identical(class(converted_dataset[["numeric_col"]]), "numeric") expect_identical(converted_dataset[["numeric_col"]], c(1.0, 9.0, NA_real_)) expect_identical(class(converted_dataset[["factor_col"]]), "numeric") expect_identical(converted_dataset[["factor_col"]], c(1.0, 1.0, 2.0)) # NAs of any type should be converted to numeric for (col in c("na_real_col", "na_character_col")) { expect_identical(class(converted_dataset[[col]]), "numeric") expect_identical(converted_dataset[[col]], rep(NA_real_, nrow(converted_dataset))) } # today, lgb.prepare_rules() does not convert logical columns expect_identical(class(converted_dataset[["na_col"]]), "logical") # today, lgb.prepare_rules() does not convert integer columns to numeric expect_identical(class(converted_dataset[["na_int_col"]]), "integer") expect_identical(converted_dataset[["na_int_col"]], rep(NA_integer_, nrow(converted_dataset))) expect_identical(class(converted_dataset[["integer_col"]]), "integer") expect_identical(converted_dataset[["integer_col"]], c(1L, 9L, NA_integer_)) # rules should be returned and correct rules <- conversion_result$rules expect_is(rules, "list") expect_length(rules, 3L) expect_identical(rules[["character_col"]], stats::setNames(c(1.0, NA_real_, 2.0), c("a", NA, "c"))) expect_identical(rules[["na_character_col"]], stats::setNames(NA_real_, NA)) expect_identical(rules[["factor_col"]], c("n" = 1.0, "y" = 2.0)) } }) test_that("lgb.prepare_rules() should work correctly if you provide your own well-formed rules", { testDF <- data.frame( character_col = c("a", NA_character_, "c", "a", "a", "c") , na_col = rep(NA, 6L) , na_real_col = rep(NA_real_, 6L) , na_int_col = rep(NA_integer_, 6L) , na_character_col = rep(NA_character_, 6L) , numeric_col = c(1.0, 9.0, NA_real_, 10.0, 11.0, 12.0) , factor_col = as.factor(c("n", "n", "y", "y", "n", "n")) , integer_col = c(1L, 9L, NA_integer_, 1L, 1L, 1L) , stringsAsFactors = FALSE ) testDT <- data.table::as.data.table(testDF) # value used by lgb.prepare_rules() when it encounters a categorical value that # is not in the provided rules UNKNOWN_FACTOR_VALUE <- 0.0 for (input_data in list(testDF, testDT)) { custom_rules <- list( "character_col" = c( "a" = 5.0 , "c" = -10.2 ) , "factor_col" = c( "n" = 65.0 , "y" = 65.01 ) ) conversion_result <- lgb.prepare_rules( data = input_data , rules = custom_rules ) # dataset should have been converted to numeric converted_dataset <- conversion_result[["data"]] expect_identical(class(input_data), class(converted_dataset)) expect_identical(class(converted_dataset[["character_col"]]), "numeric") expect_identical(converted_dataset[["character_col"]], c(5.0, UNKNOWN_FACTOR_VALUE, -10.2, 5.0, 5.0, -10.2)) expect_identical(class(converted_dataset[["factor_col"]]), "numeric") expect_identical(converted_dataset[["factor_col"]], c(65.0, 65.0, 65.01, 65.01, 65.0, 65.0)) # columns not specified in rules are not going to be converted for (col in c("na_col", "na_real_col", "na_int_col", "na_character_col", "numeric_col", "integer_col")) { expect_identical(converted_dataset[[col]], input_data[[col]]) } # the rules you passed in should be returned unchanged rules <- conversion_result$rules expect_identical(rules, custom_rules) } }) test_that("lgb.prepare_rules() should modify data.tables in-place", { testDT <- data.table::data.table( character_col = c("a", NA_character_, "c") , na_col = rep(NA, 3L) , na_real_col = rep(NA_real_, 3L) , na_int_col = rep(NA_integer_, 3L) , na_character_col = rep(NA_character_, 3L) , numeric_col = c(1.0, 9.0, NA_real_) , factor_col = as.factor(c("n", "n", "y")) , integer_col = c(1L, 9L, NA_integer_) ) conversion_result <- lgb.prepare_rules(testDT) resultDT <- conversion_result[["data"]] expect_identical(resultDT, testDT) })