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Unverified Commit e9a6c798 authored by david-cortes's avatar david-cortes Committed by GitHub
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[R-package] Use `Rf_`-prefixed versions of protect/unprotect (#6502)

parent bf2641d8
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Showing with 94 additions and 94 deletions
R-package/src/lightgbm_R.cpp
View file @ e9a6c798
......@@ -53,24 +53,24 @@ void delete_cpp_char_vec(SEXP R_ptr) {
#ifndef LGB_NO_ALTREP
SEXP make_altrepped_raw_vec(void *void_ptr) {
std::unique_ptr<std::vector<char>> *ptr_to_cpp_vec = static_cast<std::unique_ptr<std::vector<char>>*>(void_ptr);
SEXP R_ptr = PROTECT(R_MakeExternalPtr(nullptr, R_NilValue, R_NilValue));
SEXP R_raw = PROTECT(R_new_altrep(lgb_altrepped_char_vec, R_NilValue, R_NilValue));
SEXP R_ptr = Rf_protect(R_MakeExternalPtr(nullptr, R_NilValue, R_NilValue));
SEXP R_raw = Rf_protect(R_new_altrep(lgb_altrepped_char_vec, R_NilValue, R_NilValue));
R_SetExternalPtrAddr(R_ptr, ptr_to_cpp_vec->get());
R_RegisterCFinalizerEx(R_ptr, delete_cpp_char_vec, TRUE);
ptr_to_cpp_vec->release();
R_set_altrep_data1(R_raw, R_ptr);
UNPROTECT(2);
Rf_unprotect(2);
return R_raw;
}
#else
SEXP make_r_raw_vec(void *void_ptr) {
std::unique_ptr<std::vector<char>> *ptr_to_cpp_vec = static_cast<std::unique_ptr<std::vector<char>>*>(void_ptr);
R_xlen_t len = ptr_to_cpp_vec->get()->size();
SEXP out = PROTECT(Rf_allocVector(RAWSXP, len));
SEXP out = Rf_protect(Rf_allocVector(RAWSXP, len));
std::copy(ptr_to_cpp_vec->get()->begin(), ptr_to_cpp_vec->get()->end(), reinterpret_cast<char*>(RAW(out)));
UNPROTECT(1);
Rf_unprotect(1);
return out;
}
#define make_altrepped_raw_vec make_r_raw_vec
......@@ -132,9 +132,9 @@ template <class T>
SEXP make_altrepped_vec_from_arr(void *void_ptr) {
T *arr = static_cast<arr_and_len<T>*>(void_ptr)->arr;
uint64_t len = static_cast<arr_and_len<T>*>(void_ptr)->len;
SEXP R_ptr = PROTECT(R_MakeExternalPtr(nullptr, R_NilValue, R_NilValue));
SEXP R_len = PROTECT(Rf_allocVector(REALSXP, 1));
SEXP R_vec = PROTECT(R_new_altrep(get_altrep_class_for_type<T>(), R_NilValue, R_NilValue));
SEXP R_ptr = Rf_protect(R_MakeExternalPtr(nullptr, R_NilValue, R_NilValue));
SEXP R_len = Rf_protect(Rf_allocVector(REALSXP, 1));
SEXP R_vec = Rf_protect(R_new_altrep(get_altrep_class_for_type<T>(), R_NilValue, R_NilValue));
REAL(R_len)[0] = static_cast<double>(len);
R_SetExternalPtrAddr(R_ptr, arr);
......@@ -142,7 +142,7 @@ SEXP make_altrepped_vec_from_arr(void *void_ptr) {
R_set_altrep_data1(R_vec, R_ptr);
R_set_altrep_data2(R_vec, R_len);
UNPROTECT(3);
Rf_unprotect(3);
return R_vec;
}
#else
......@@ -150,9 +150,9 @@ template <class T>
SEXP make_R_vec_from_arr(void *void_ptr) {
T *arr = static_cast<arr_and_len<T>*>(void_ptr)->arr;
uint64_t len = static_cast<arr_and_len<T>*>(void_ptr)->len;
SEXP out = PROTECT(Rf_allocVector(get_sexptype_class_for_type<T>(), len));
SEXP out = Rf_protect(Rf_allocVector(get_sexptype_class_for_type<T>(), len));
std::copy(arr, arr + len, get_r_vec_ptr<T>(out));
UNPROTECT(1);
Rf_unprotect(1);
return out;
}
#define make_altrepped_vec_from_arr make_R_vec_from_arr
......@@ -288,18 +288,18 @@ SEXP LGBM_DatasetCreateFromFile_R(SEXP filename,
SEXP parameters,
SEXP reference) {
R_API_BEGIN();
SEXP ret = PROTECT(R_MakeExternalPtr(nullptr, R_NilValue, R_NilValue));
SEXP ret = Rf_protect(R_MakeExternalPtr(nullptr, R_NilValue, R_NilValue));
DatasetHandle handle = nullptr;
DatasetHandle ref = nullptr;
if (!Rf_isNull(reference)) {
ref = R_ExternalPtrAddr(reference);
}
const char* filename_ptr = CHAR(PROTECT(Rf_asChar(filename)));
const char* parameters_ptr = CHAR(PROTECT(Rf_asChar(parameters)));
const char* filename_ptr = CHAR(Rf_protect(Rf_asChar(filename)));
const char* parameters_ptr = CHAR(Rf_protect(Rf_asChar(parameters)));
CHECK_CALL(LGBM_DatasetCreateFromFile(filename_ptr, parameters_ptr, ref, &handle));
R_SetExternalPtrAddr(ret, handle);
R_RegisterCFinalizerEx(ret, _DatasetFinalizer, TRUE);
UNPROTECT(3);
Rf_unprotect(3);
return ret;
R_API_END();
}
......@@ -313,14 +313,14 @@ SEXP LGBM_DatasetCreateFromCSC_R(SEXP indptr,
SEXP parameters,
SEXP reference) {
R_API_BEGIN();
SEXP ret = PROTECT(R_MakeExternalPtr(nullptr, R_NilValue, R_NilValue));
SEXP ret = Rf_protect(R_MakeExternalPtr(nullptr, R_NilValue, R_NilValue));
const int* p_indptr = INTEGER(indptr);
const int* p_indices = INTEGER(indices);
const double* p_data = REAL(data);
int64_t nindptr = static_cast<int64_t>(Rf_asInteger(num_indptr));
int64_t ndata = static_cast<int64_t>(Rf_asInteger(nelem));
int64_t nrow = static_cast<int64_t>(Rf_asInteger(num_row));
const char* parameters_ptr = CHAR(PROTECT(Rf_asChar(parameters)));
const char* parameters_ptr = CHAR(Rf_protect(Rf_asChar(parameters)));
DatasetHandle handle = nullptr;
DatasetHandle ref = nullptr;
if (!Rf_isNull(reference)) {
......@@ -331,7 +331,7 @@ SEXP LGBM_DatasetCreateFromCSC_R(SEXP indptr,
nrow, parameters_ptr, ref, &handle));
R_SetExternalPtrAddr(ret, handle);
R_RegisterCFinalizerEx(ret, _DatasetFinalizer, TRUE);
UNPROTECT(2);
Rf_unprotect(2);
return ret;
R_API_END();
}
......@@ -342,11 +342,11 @@ SEXP LGBM_DatasetCreateFromMat_R(SEXP data,
SEXP parameters,
SEXP reference) {
R_API_BEGIN();
SEXP ret = PROTECT(R_MakeExternalPtr(nullptr, R_NilValue, R_NilValue));
SEXP ret = Rf_protect(R_MakeExternalPtr(nullptr, R_NilValue, R_NilValue));
int32_t nrow = static_cast<int32_t>(Rf_asInteger(num_row));
int32_t ncol = static_cast<int32_t>(Rf_asInteger(num_col));
double* p_mat = REAL(data);
const char* parameters_ptr = CHAR(PROTECT(Rf_asChar(parameters)));
const char* parameters_ptr = CHAR(Rf_protect(Rf_asChar(parameters)));
DatasetHandle handle = nullptr;
DatasetHandle ref = nullptr;
if (!Rf_isNull(reference)) {
......@@ -356,7 +356,7 @@ SEXP LGBM_DatasetCreateFromMat_R(SEXP data,
parameters_ptr, ref, &handle));
R_SetExternalPtrAddr(ret, handle);
R_RegisterCFinalizerEx(ret, _DatasetFinalizer, TRUE);
UNPROTECT(2);
Rf_unprotect(2);
return ret;
R_API_END();
}
......@@ -367,7 +367,7 @@ SEXP LGBM_DatasetGetSubset_R(SEXP handle,
SEXP parameters) {
R_API_BEGIN();
_AssertDatasetHandleNotNull(handle);
SEXP ret = PROTECT(R_MakeExternalPtr(nullptr, R_NilValue, R_NilValue));
SEXP ret = Rf_protect(R_MakeExternalPtr(nullptr, R_NilValue, R_NilValue));
int32_t len = static_cast<int32_t>(Rf_asInteger(len_used_row_indices));
std::unique_ptr<int32_t[]> idxvec(new int32_t[len]);
// convert from one-based to zero-based index
......@@ -378,14 +378,14 @@ SEXP LGBM_DatasetGetSubset_R(SEXP handle,
for (int32_t i = 0; i < len; ++i) {
idxvec[i] = static_cast<int32_t>(used_row_indices_[i] - 1);
}
const char* parameters_ptr = CHAR(PROTECT(Rf_asChar(parameters)));
const char* parameters_ptr = CHAR(Rf_protect(Rf_asChar(parameters)));
DatasetHandle res = nullptr;
CHECK_CALL(LGBM_DatasetGetSubset(R_ExternalPtrAddr(handle),
idxvec.get(), len, parameters_ptr,
&res));
R_SetExternalPtrAddr(ret, res);
R_RegisterCFinalizerEx(ret, _DatasetFinalizer, TRUE);
UNPROTECT(2);
Rf_unprotect(2);
return ret;
R_API_END();
}
......@@ -394,7 +394,7 @@ SEXP LGBM_DatasetSetFeatureNames_R(SEXP handle,
SEXP feature_names) {
R_API_BEGIN();
_AssertDatasetHandleNotNull(handle);
auto vec_names = Split(CHAR(PROTECT(Rf_asChar(feature_names))), '\t');
auto vec_names = Split(CHAR(Rf_protect(Rf_asChar(feature_names))), '\t');
int len = static_cast<int>(vec_names.size());
std::unique_ptr<const char*[]> vec_sptr(new const char*[len]);
for (int i = 0; i < len; ++i) {
......@@ -402,13 +402,13 @@ SEXP LGBM_DatasetSetFeatureNames_R(SEXP handle,
}
CHECK_CALL(LGBM_DatasetSetFeatureNames(R_ExternalPtrAddr(handle),
vec_sptr.get(), len));
UNPROTECT(1);
Rf_unprotect(1);
return R_NilValue;
R_API_END();
}
SEXP LGBM_DatasetGetFeatureNames_R(SEXP handle) {
SEXP cont_token = PROTECT(R_MakeUnwindCont());
SEXP cont_token = Rf_protect(R_MakeUnwindCont());
R_API_BEGIN();
_AssertDatasetHandleNotNull(handle);
SEXP feature_names;
......@@ -446,11 +446,11 @@ SEXP LGBM_DatasetGetFeatureNames_R(SEXP handle) {
ptr_names.data()));
}
CHECK_EQ(len, out_len);
feature_names = PROTECT(safe_R_string(static_cast<R_xlen_t>(len), &cont_token));
feature_names = Rf_protect(safe_R_string(static_cast<R_xlen_t>(len), &cont_token));
for (int i = 0; i < len; ++i) {
SET_STRING_ELT(feature_names, i, safe_R_mkChar(ptr_names[i], &cont_token));
}
UNPROTECT(2);
Rf_unprotect(2);
return feature_names;
R_API_END();
}
......@@ -459,10 +459,10 @@ SEXP LGBM_DatasetSaveBinary_R(SEXP handle,
SEXP filename) {
R_API_BEGIN();
_AssertDatasetHandleNotNull(handle);
const char* filename_ptr = CHAR(PROTECT(Rf_asChar(filename)));
const char* filename_ptr = CHAR(Rf_protect(Rf_asChar(filename)));
CHECK_CALL(LGBM_DatasetSaveBinary(R_ExternalPtrAddr(handle),
filename_ptr));
UNPROTECT(1);
Rf_unprotect(1);
return R_NilValue;
R_API_END();
}
......@@ -484,7 +484,7 @@ SEXP LGBM_DatasetSetField_R(SEXP handle,
R_API_BEGIN();
_AssertDatasetHandleNotNull(handle);
int len = Rf_asInteger(num_element);
const char* name = CHAR(PROTECT(Rf_asChar(field_name)));
const char* name = CHAR(Rf_protect(Rf_asChar(field_name)));
if (!strcmp("group", name) || !strcmp("query", name)) {
CHECK_CALL(LGBM_DatasetSetField(R_ExternalPtrAddr(handle), name, INTEGER(field_data), len, C_API_DTYPE_INT32));
} else if (!strcmp("init_score", name)) {
......@@ -494,7 +494,7 @@ SEXP LGBM_DatasetSetField_R(SEXP handle,
std::copy(REAL(field_data), REAL(field_data) + len, vec.get());
CHECK_CALL(LGBM_DatasetSetField(R_ExternalPtrAddr(handle), name, vec.get(), len, C_API_DTYPE_FLOAT32));
}
UNPROTECT(1);
Rf_unprotect(1);
return R_NilValue;
R_API_END();
}
......@@ -504,7 +504,7 @@ SEXP LGBM_DatasetGetField_R(SEXP handle,
SEXP field_data) {
R_API_BEGIN();
_AssertDatasetHandleNotNull(handle);
const char* name = CHAR(PROTECT(Rf_asChar(field_name)));
const char* name = CHAR(Rf_protect(Rf_asChar(field_name)));
int out_len = 0;
int out_type = 0;
const void* res;
......@@ -526,7 +526,7 @@ SEXP LGBM_DatasetGetField_R(SEXP handle,
auto p_data = reinterpret_cast<const float*>(res);
std::copy(p_data, p_data + out_len, REAL(field_data));
}
UNPROTECT(1);
Rf_unprotect(1);
return R_NilValue;
R_API_END();
}
......@@ -536,7 +536,7 @@ SEXP LGBM_DatasetGetFieldSize_R(SEXP handle,
SEXP out) {
R_API_BEGIN();
_AssertDatasetHandleNotNull(handle);
const char* name = CHAR(PROTECT(Rf_asChar(field_name)));
const char* name = CHAR(Rf_protect(Rf_asChar(field_name)));
int out_len = 0;
int out_type = 0;
const void* res;
......@@ -545,7 +545,7 @@ SEXP LGBM_DatasetGetFieldSize_R(SEXP handle,
out_len -= 1;
}
INTEGER(out)[0] = out_len;
UNPROTECT(1);
Rf_unprotect(1);
return R_NilValue;
R_API_END();
}
......@@ -553,10 +553,10 @@ SEXP LGBM_DatasetGetFieldSize_R(SEXP handle,
SEXP LGBM_DatasetUpdateParamChecking_R(SEXP old_params,
SEXP new_params) {
R_API_BEGIN();
const char* old_params_ptr = CHAR(PROTECT(Rf_asChar(old_params)));
const char* new_params_ptr = CHAR(PROTECT(Rf_asChar(new_params)));
const char* old_params_ptr = CHAR(Rf_protect(Rf_asChar(old_params)));
const char* new_params_ptr = CHAR(Rf_protect(Rf_asChar(new_params)));
CHECK_CALL(LGBM_DatasetUpdateParamChecking(old_params_ptr, new_params_ptr));
UNPROTECT(2);
Rf_unprotect(2);
return R_NilValue;
R_API_END();
}
......@@ -613,34 +613,34 @@ SEXP LGBM_BoosterCreate_R(SEXP train_data,
SEXP parameters) {
R_API_BEGIN();
_AssertDatasetHandleNotNull(train_data);
SEXP ret = PROTECT(R_MakeExternalPtr(nullptr, R_NilValue, R_NilValue));
const char* parameters_ptr = CHAR(PROTECT(Rf_asChar(parameters)));
SEXP ret = Rf_protect(R_MakeExternalPtr(nullptr, R_NilValue, R_NilValue));
const char* parameters_ptr = CHAR(Rf_protect(Rf_asChar(parameters)));
BoosterHandle handle = nullptr;
CHECK_CALL(LGBM_BoosterCreate(R_ExternalPtrAddr(train_data), parameters_ptr, &handle));
R_SetExternalPtrAddr(ret, handle);
R_RegisterCFinalizerEx(ret, _BoosterFinalizer, TRUE);
UNPROTECT(2);
Rf_unprotect(2);
return ret;
R_API_END();
}
SEXP LGBM_BoosterCreateFromModelfile_R(SEXP filename) {
R_API_BEGIN();
SEXP ret = PROTECT(R_MakeExternalPtr(nullptr, R_NilValue, R_NilValue));
SEXP ret = Rf_protect(R_MakeExternalPtr(nullptr, R_NilValue, R_NilValue));
int out_num_iterations = 0;
const char* filename_ptr = CHAR(PROTECT(Rf_asChar(filename)));
const char* filename_ptr = CHAR(Rf_protect(Rf_asChar(filename)));
BoosterHandle handle = nullptr;
CHECK_CALL(LGBM_BoosterCreateFromModelfile(filename_ptr, &out_num_iterations, &handle));
R_SetExternalPtrAddr(ret, handle);
R_RegisterCFinalizerEx(ret, _BoosterFinalizer, TRUE);
UNPROTECT(2);
Rf_unprotect(2);
return ret;
R_API_END();
}
SEXP LGBM_BoosterLoadModelFromString_R(SEXP model_str) {
R_API_BEGIN();
SEXP ret = PROTECT(R_MakeExternalPtr(nullptr, R_NilValue, R_NilValue));
SEXP ret = Rf_protect(R_MakeExternalPtr(nullptr, R_NilValue, R_NilValue));
SEXP temp = NULL;
int n_protected = 1;
int out_num_iterations = 0;
......@@ -655,7 +655,7 @@ SEXP LGBM_BoosterLoadModelFromString_R(SEXP model_str) {
break;
}
case STRSXP: {
temp = PROTECT(STRING_ELT(model_str, 0));
temp = Rf_protect(STRING_ELT(model_str, 0));
n_protected++;
model_str_ptr = reinterpret_cast<const char*>(CHAR(temp));
}
......@@ -664,7 +664,7 @@ SEXP LGBM_BoosterLoadModelFromString_R(SEXP model_str) {
CHECK_CALL(LGBM_BoosterLoadModelFromString(model_str_ptr, &out_num_iterations, &handle));
R_SetExternalPtrAddr(ret, handle);
R_RegisterCFinalizerEx(ret, _BoosterFinalizer, TRUE);
UNPROTECT(n_protected);
Rf_unprotect(n_protected);
return ret;
R_API_END();
}
......@@ -703,9 +703,9 @@ SEXP LGBM_BoosterResetParameter_R(SEXP handle,
SEXP parameters) {
R_API_BEGIN();
_AssertBoosterHandleNotNull(handle);
const char* parameters_ptr = CHAR(PROTECT(Rf_asChar(parameters)));
const char* parameters_ptr = CHAR(Rf_protect(Rf_asChar(parameters)));
CHECK_CALL(LGBM_BoosterResetParameter(R_ExternalPtrAddr(handle), parameters_ptr));
UNPROTECT(1);
Rf_unprotect(1);
return R_NilValue;
R_API_END();
}
......@@ -795,7 +795,7 @@ SEXP LGBM_BoosterGetLowerBoundValue_R(SEXP handle,
}
SEXP LGBM_BoosterGetEvalNames_R(SEXP handle) {
SEXP cont_token = PROTECT(R_MakeUnwindCont());
SEXP cont_token = Rf_protect(R_MakeUnwindCont());
R_API_BEGIN();
_AssertBoosterHandleNotNull(handle);
SEXP eval_names;
......@@ -834,11 +834,11 @@ SEXP LGBM_BoosterGetEvalNames_R(SEXP handle) {
ptr_names.data()));
}
CHECK_EQ(out_len, len);
eval_names = PROTECT(safe_R_string(static_cast<R_xlen_t>(len), &cont_token));
eval_names = Rf_protect(safe_R_string(static_cast<R_xlen_t>(len), &cont_token));
for (int i = 0; i < len; ++i) {
SET_STRING_ELT(eval_names, i, safe_R_mkChar(ptr_names[i], &cont_token));
}
UNPROTECT(2);
Rf_unprotect(2);
return eval_names;
R_API_END();
}
......@@ -908,14 +908,14 @@ SEXP LGBM_BoosterPredictForFile_R(SEXP handle,
SEXP result_filename) {
R_API_BEGIN();
_AssertBoosterHandleNotNull(handle);
const char* data_filename_ptr = CHAR(PROTECT(Rf_asChar(data_filename)));
const char* parameter_ptr = CHAR(PROTECT(Rf_asChar(parameter)));
const char* result_filename_ptr = CHAR(PROTECT(Rf_asChar(result_filename)));
const char* data_filename_ptr = CHAR(Rf_protect(Rf_asChar(data_filename)));
const char* parameter_ptr = CHAR(Rf_protect(Rf_asChar(parameter)));
const char* result_filename_ptr = CHAR(Rf_protect(Rf_asChar(result_filename)));
int pred_type = GetPredictType(is_rawscore, is_leafidx, is_predcontrib);
CHECK_CALL(LGBM_BoosterPredictForFile(R_ExternalPtrAddr(handle), data_filename_ptr,
Rf_asInteger(data_has_header), pred_type, Rf_asInteger(start_iteration), Rf_asInteger(num_iteration), parameter_ptr,
result_filename_ptr));
UNPROTECT(3);
Rf_unprotect(3);
return R_NilValue;
R_API_END();
}
......@@ -964,12 +964,12 @@ SEXP LGBM_BoosterPredictForCSC_R(SEXP handle,
int64_t nrow = static_cast<int64_t>(Rf_asInteger(num_row));
double* ptr_ret = REAL(out_result);
int64_t out_len;
const char* parameter_ptr = CHAR(PROTECT(Rf_asChar(parameter)));
const char* parameter_ptr = CHAR(Rf_protect(Rf_asChar(parameter)));
CHECK_CALL(LGBM_BoosterPredictForCSC(R_ExternalPtrAddr(handle),
p_indptr, C_API_DTYPE_INT32, p_indices,
p_data, C_API_DTYPE_FLOAT64, nindptr, ndata,
nrow, pred_type, Rf_asInteger(start_iteration), Rf_asInteger(num_iteration), parameter_ptr, &out_len, ptr_ret));
UNPROTECT(1);
Rf_unprotect(1);
return R_NilValue;
R_API_END();
}
......@@ -989,7 +989,7 @@ SEXP LGBM_BoosterPredictForCSR_R(SEXP handle,
R_API_BEGIN();
_AssertBoosterHandleNotNull(handle);
int pred_type = GetPredictType(is_rawscore, is_leafidx, is_predcontrib);
const char* parameter_ptr = CHAR(PROTECT(Rf_asChar(parameter)));
const char* parameter_ptr = CHAR(Rf_protect(Rf_asChar(parameter)));
int64_t out_len;
CHECK_CALL(LGBM_BoosterPredictForCSR(R_ExternalPtrAddr(handle),
INTEGER(indptr), C_API_DTYPE_INT32, INTEGER(indices),
......@@ -997,7 +997,7 @@ SEXP LGBM_BoosterPredictForCSR_R(SEXP handle,
Rf_xlength(indptr), Rf_xlength(data), Rf_asInteger(ncols),
pred_type, Rf_asInteger(start_iteration), Rf_asInteger(num_iteration),
parameter_ptr, &out_len, REAL(out_result)));
UNPROTECT(1);
Rf_unprotect(1);
return R_NilValue;
R_API_END();
}
......@@ -1016,7 +1016,7 @@ SEXP LGBM_BoosterPredictForCSRSingleRow_R(SEXP handle,
R_API_BEGIN();
_AssertBoosterHandleNotNull(handle);
int pred_type = GetPredictType(is_rawscore, is_leafidx, is_predcontrib);
const char* parameter_ptr = CHAR(PROTECT(Rf_asChar(parameter)));
const char* parameter_ptr = CHAR(Rf_protect(Rf_asChar(parameter)));
int nnz = static_cast<int>(Rf_xlength(data));
const int indptr[] = {0, nnz};
int64_t out_len;
......@@ -1026,7 +1026,7 @@ SEXP LGBM_BoosterPredictForCSRSingleRow_R(SEXP handle,
2, nnz, Rf_asInteger(ncols),
pred_type, Rf_asInteger(start_iteration), Rf_asInteger(num_iteration),
parameter_ptr, &out_len, REAL(out_result)));
UNPROTECT(1);
Rf_unprotect(1);
return R_NilValue;
R_API_END();
}
......@@ -1046,8 +1046,8 @@ SEXP LGBM_BoosterPredictForCSRSingleRowFastInit_R(SEXP handle,
R_API_BEGIN();
_AssertBoosterHandleNotNull(handle);
int pred_type = GetPredictType(is_rawscore, is_leafidx, is_predcontrib);
SEXP ret = PROTECT(R_MakeExternalPtr(nullptr, R_NilValue, R_NilValue));
const char* parameter_ptr = CHAR(PROTECT(Rf_asChar(parameter)));
SEXP ret = Rf_protect(R_MakeExternalPtr(nullptr, R_NilValue, R_NilValue));
const char* parameter_ptr = CHAR(Rf_protect(Rf_asChar(parameter)));
FastConfigHandle out_fastConfig;
CHECK_CALL(LGBM_BoosterPredictForCSRSingleRowFastInit(R_ExternalPtrAddr(handle),
pred_type, Rf_asInteger(start_iteration), Rf_asInteger(num_iteration),
......@@ -1055,7 +1055,7 @@ SEXP LGBM_BoosterPredictForCSRSingleRowFastInit_R(SEXP handle,
parameter_ptr, &out_fastConfig));
R_SetExternalPtrAddr(ret, out_fastConfig);
R_RegisterCFinalizerEx(ret, LGBM_FastConfigFree_wrapped, TRUE);
UNPROTECT(2);
Rf_unprotect(2);
return ret;
R_API_END();
}
......@@ -1095,12 +1095,12 @@ SEXP LGBM_BoosterPredictForMat_R(SEXP handle,
int32_t ncol = static_cast<int32_t>(Rf_asInteger(num_col));
const double* p_mat = REAL(data);
double* ptr_ret = REAL(out_result);
const char* parameter_ptr = CHAR(PROTECT(Rf_asChar(parameter)));
const char* parameter_ptr = CHAR(Rf_protect(Rf_asChar(parameter)));
int64_t out_len;
CHECK_CALL(LGBM_BoosterPredictForMat(R_ExternalPtrAddr(handle),
p_mat, C_API_DTYPE_FLOAT64, nrow, ncol, COL_MAJOR,
pred_type, Rf_asInteger(start_iteration), Rf_asInteger(num_iteration), parameter_ptr, &out_len, ptr_ret));
UNPROTECT(1);
Rf_unprotect(1);
return R_NilValue;
R_API_END();
}
......@@ -1128,12 +1128,12 @@ SEXP LGBM_BoosterPredictSparseOutput_R(SEXP handle,
SEXP start_iteration,
SEXP num_iteration,
SEXP parameter) {
SEXP cont_token = PROTECT(R_MakeUnwindCont());
SEXP cont_token = Rf_protect(R_MakeUnwindCont());
R_API_BEGIN();
_AssertBoosterHandleNotNull(handle);
const char* out_names[] = {"indptr", "indices", "data", ""};
SEXP out = PROTECT(Rf_mkNamed(VECSXP, out_names));
const char* parameter_ptr = CHAR(PROTECT(Rf_asChar(parameter)));
SEXP out = Rf_protect(Rf_mkNamed(VECSXP, out_names));
const char* parameter_ptr = CHAR(Rf_protect(Rf_asChar(parameter)));
int64_t out_len[2];
void *out_indptr;
......@@ -1179,7 +1179,7 @@ SEXP LGBM_BoosterPredictSparseOutput_R(SEXP handle,
static_cast<void*>(&data_str), throw_R_memerr, &cont_token, cont_token));
pointers_struct->data = nullptr;
UNPROTECT(3);
Rf_unprotect(3);
return out;
R_API_END();
}
......@@ -1196,14 +1196,14 @@ SEXP LGBM_BoosterPredictForMatSingleRow_R(SEXP handle,
R_API_BEGIN();
_AssertBoosterHandleNotNull(handle);
int pred_type = GetPredictType(is_rawscore, is_leafidx, is_predcontrib);
const char* parameter_ptr = CHAR(PROTECT(Rf_asChar(parameter)));
const char* parameter_ptr = CHAR(Rf_protect(Rf_asChar(parameter)));
double* ptr_ret = REAL(out_result);
int64_t out_len;
CHECK_CALL(LGBM_BoosterPredictForMatSingleRow(R_ExternalPtrAddr(handle),
REAL(data), C_API_DTYPE_FLOAT64, Rf_xlength(data), 1,
pred_type, Rf_asInteger(start_iteration), Rf_asInteger(num_iteration),
parameter_ptr, &out_len, ptr_ret));
UNPROTECT(1);
Rf_unprotect(1);
return R_NilValue;
R_API_END();
}
......@@ -1219,8 +1219,8 @@ SEXP LGBM_BoosterPredictForMatSingleRowFastInit_R(SEXP handle,
R_API_BEGIN();
_AssertBoosterHandleNotNull(handle);
int pred_type = GetPredictType(is_rawscore, is_leafidx, is_predcontrib);
SEXP ret = PROTECT(R_MakeExternalPtr(nullptr, R_NilValue, R_NilValue));
const char* parameter_ptr = CHAR(PROTECT(Rf_asChar(parameter)));
SEXP ret = Rf_protect(R_MakeExternalPtr(nullptr, R_NilValue, R_NilValue));
const char* parameter_ptr = CHAR(Rf_protect(Rf_asChar(parameter)));
FastConfigHandle out_fastConfig;
CHECK_CALL(LGBM_BoosterPredictForMatSingleRowFastInit(R_ExternalPtrAddr(handle),
pred_type, Rf_asInteger(start_iteration), Rf_asInteger(num_iteration),
......@@ -1228,7 +1228,7 @@ SEXP LGBM_BoosterPredictForMatSingleRowFastInit_R(SEXP handle,
parameter_ptr, &out_fastConfig));
R_SetExternalPtrAddr(ret, out_fastConfig);
R_RegisterCFinalizerEx(ret, LGBM_FastConfigFree_wrapped, TRUE);
UNPROTECT(2);
Rf_unprotect(2);
return ret;
R_API_END();
}
......@@ -1251,9 +1251,9 @@ SEXP LGBM_BoosterSaveModel_R(SEXP handle,
SEXP start_iteration) {
R_API_BEGIN();
_AssertBoosterHandleNotNull(handle);
const char* filename_ptr = CHAR(PROTECT(Rf_asChar(filename)));
const char* filename_ptr = CHAR(Rf_protect(Rf_asChar(filename)));
CHECK_CALL(LGBM_BoosterSaveModel(R_ExternalPtrAddr(handle), Rf_asInteger(start_iteration), Rf_asInteger(num_iteration), Rf_asInteger(feature_importance_type), filename_ptr));
UNPROTECT(1);
Rf_unprotect(1);
return R_NilValue;
R_API_END();
}
......@@ -1266,7 +1266,7 @@ SEXP LGBM_BoosterSaveModelToString_R(SEXP handle,
SEXP num_iteration,
SEXP feature_importance_type,
SEXP start_iteration) {
SEXP cont_token = PROTECT(R_MakeUnwindCont());
SEXP cont_token = Rf_protect(R_MakeUnwindCont());
R_API_BEGIN();
_AssertBoosterHandleNotNull(handle);
int64_t out_len = 0;
......@@ -1281,7 +1281,7 @@ SEXP LGBM_BoosterSaveModelToString_R(SEXP handle,
CHECK_CALL(LGBM_BoosterSaveModelToString(R_ExternalPtrAddr(handle), start_iter, num_iter, importance_type, out_len, &out_len, inner_char_buf->data()));
}
SEXP out = R_UnwindProtect(make_altrepped_raw_vec, &inner_char_buf, throw_R_memerr, &cont_token, cont_token);
UNPROTECT(1);
Rf_unprotect(1);
return out;
R_API_END();
}
......@@ -1290,7 +1290,7 @@ SEXP LGBM_BoosterSaveModelToString_R(SEXP handle,
SEXP num_iteration,
SEXP feature_importance_type,
SEXP start_iteration) {
SEXP cont_token = PROTECT(R_MakeUnwindCont());
SEXP cont_token = Rf_protect(R_MakeUnwindCont());
R_API_BEGIN();
_AssertBoosterHandleNotNull(handle);
int64_t out_len = 0;
......@@ -1300,14 +1300,14 @@ SEXP LGBM_BoosterSaveModelToString_R(SEXP handle,
int importance_type = Rf_asInteger(feature_importance_type);
std::vector<char> inner_char_buf(buf_len);
CHECK_CALL(LGBM_BoosterSaveModelToString(R_ExternalPtrAddr(handle), start_iter, num_iter, importance_type, buf_len, &out_len, inner_char_buf.data()));
SEXP model_str = PROTECT(safe_R_raw(out_len, &cont_token));
SEXP model_str = Rf_protect(safe_R_raw(out_len, &cont_token));
// if the model string was larger than the initial buffer, call the function again, writing directly to the R object
if (out_len > buf_len) {
CHECK_CALL(LGBM_BoosterSaveModelToString(R_ExternalPtrAddr(handle), start_iter, num_iter, importance_type, out_len, &out_len, reinterpret_cast<char*>(RAW(model_str))));
} else {
std::copy(inner_char_buf.begin(), inner_char_buf.begin() + out_len, reinterpret_cast<char*>(RAW(model_str)));
}
UNPROTECT(2);
Rf_unprotect(2);
return model_str;
R_API_END();
}
......@@ -1317,7 +1317,7 @@ SEXP LGBM_BoosterDumpModel_R(SEXP handle,
SEXP num_iteration,
SEXP feature_importance_type,
SEXP start_iteration) {
SEXP cont_token = PROTECT(R_MakeUnwindCont());
SEXP cont_token = Rf_protect(R_MakeUnwindCont());
R_API_BEGIN();
_AssertBoosterHandleNotNull(handle);
SEXP model_str;
......@@ -1333,15 +1333,15 @@ SEXP LGBM_BoosterDumpModel_R(SEXP handle,
inner_char_buf.resize(out_len);
CHECK_CALL(LGBM_BoosterDumpModel(R_ExternalPtrAddr(handle), start_iter, num_iter, importance_type, out_len, &out_len, inner_char_buf.data()));
}
model_str = PROTECT(safe_R_string(static_cast<R_xlen_t>(1), &cont_token));
model_str = Rf_protect(safe_R_string(static_cast<R_xlen_t>(1), &cont_token));
SET_STRING_ELT(model_str, 0, safe_R_mkChar(inner_char_buf.data(), &cont_token));
UNPROTECT(2);
Rf_unprotect(2);
return model_str;
R_API_END();
}
SEXP LGBM_DumpParamAliases_R() {
SEXP cont_token = PROTECT(R_MakeUnwindCont());
SEXP cont_token = Rf_protect(R_MakeUnwindCont());
R_API_BEGIN();
SEXP aliases_str;
int64_t out_len = 0;
......@@ -1353,15 +1353,15 @@ SEXP LGBM_DumpParamAliases_R() {
inner_char_buf.resize(out_len);
CHECK_CALL(LGBM_DumpParamAliases(out_len, &out_len, inner_char_buf.data()));
}
aliases_str = PROTECT(safe_R_string(static_cast<R_xlen_t>(1), &cont_token));
aliases_str = Rf_protect(safe_R_string(static_cast<R_xlen_t>(1), &cont_token));
SET_STRING_ELT(aliases_str, 0, safe_R_mkChar(inner_char_buf.data(), &cont_token));
UNPROTECT(2);
Rf_unprotect(2);
return aliases_str;
R_API_END();
}
SEXP LGBM_BoosterGetLoadedParam_R(SEXP handle) {
SEXP cont_token = PROTECT(R_MakeUnwindCont());
SEXP cont_token = Rf_protect(R_MakeUnwindCont());
R_API_BEGIN();
_AssertBoosterHandleNotNull(handle);
SEXP params_str;
......@@ -1374,9 +1374,9 @@ SEXP LGBM_BoosterGetLoadedParam_R(SEXP handle) {
inner_char_buf.resize(out_len);
CHECK_CALL(LGBM_BoosterGetLoadedParam(R_ExternalPtrAddr(handle), out_len, &out_len, inner_char_buf.data()));
}
params_str = PROTECT(safe_R_string(static_cast<R_xlen_t>(1), &cont_token));
params_str = Rf_protect(safe_R_string(static_cast<R_xlen_t>(1), &cont_token));
SET_STRING_ELT(params_str, 0, safe_R_mkChar(inner_char_buf.data(), &cont_token));
UNPROTECT(2);
Rf_unprotect(2);
return params_str;
R_API_END();
}
......
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