# Copyright (c) 2020 PaddlePaddle Authors. All Rights Reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. import argparse import os import paddle from medicalseg.cvlibs import Config from medicalseg.core import evaluate from medicalseg.utils import get_sys_env, logger, utils def parse_args(): parser = argparse.ArgumentParser(description='Model evaluation') # params of evaluate parser.add_argument( "--config", dest="cfg", help="The config file.", default=None, type=str) parser.add_argument( '--model_path', dest='model_path', help='The path of model for evaluation', type=str, default="saved_model/vnet_lung_coronavirus_128_128_128_15k/best_model/model.pdparams" ) parser.add_argument( '--save_dir', dest='save_dir', help='The path to save result', type=str, default="saved_model/vnet_lung_coronavirus_128_128_128_15k/best_model") parser.add_argument( '--num_workers', dest='num_workers', help='Num workers for data loader', type=int, default=0) parser.add_argument( '--print_detail', # the dest cannot have space in it help='Whether to print evaluate values', type=bool, default=True) parser.add_argument( '--use_vdl', help='Whether to use visualdl to record result images', type=bool, default=True) parser.add_argument( '--auc_roc', help='Whether to use auc_roc metric', type=bool, default=False) parser.add_argument('--sw_num', default=None, type=int, help='sw_num') parser.add_argument( '--is_save_data', default=True, type=eval, help='warmup') parser.add_argument( '--has_dataset_json', default=True, type=eval, help='has_dataset_json') return parser.parse_args() def main(args): env_info = get_sys_env() place = 'gpu' if env_info['Paddle compiled with cuda'] and env_info[ 'GPUs used'] else 'cpu' paddle.set_device(place) if not args.cfg: raise RuntimeError('No configuration file specified.') cfg = Config(args.cfg) losses = cfg.loss val_dataset = cfg.val_dataset if val_dataset is None: raise RuntimeError( 'The verification dataset is not specified in the configuration file.' ) elif len(val_dataset) == 0: raise ValueError( 'The length of val_dataset is 0. Please check if your dataset is valid' ) msg = '\n---------------Config Information---------------\n' msg += str(cfg) msg += '------------------------------------------------' logger.info(msg) model = cfg.model if args.model_path: utils.load_entire_model(model, args.model_path) logger.info('Loaded trained params of model successfully') if args.use_vdl: from visualdl import LogWriter log_writer = LogWriter(args.save_dir) evaluate( model, val_dataset, losses, num_workers=args.num_workers, print_detail=args.print_detail, auc_roc=args.auc_roc, writer=log_writer, save_dir=args.save_dir, sw_num=args.sw_num, is_save_data=args.is_save_data, has_dataset_json=args.has_dataset_json) if __name__ == '__main__': args = parse_args() main(args)