v1.0

Diffusion_UKAN/inception-score-pytorch/inception_score.py

+import torch
+from torch import nn
+from torch.autograd import Variable
+from torch.nn import functional as F
+import torch.utils.data
+from torchvision.models.inception import inception_v3
+import os
+from skimage import io
+import cv2
+import os
+import numpy as np
+from scipy.stats import entropy
+import torchvision.datasets as dset
+import torchvision.transforms as transforms
+
+import argparse
+def inception_score(imgs, cuda=True, batch_size=32, resize=False, splits=32):
+    """Computes the inception score of the generated images imgs
+
+    imgs -- Torch dataset of (3xHxW) numpy images normalized in the range [-1, 1]
+    cuda -- whether or not to run on GPU
+    batch_size -- batch size for feeding into Inception v3
+    splits -- number of splits
+    """
+    N = len(imgs)
+
+    assert batch_size > 0
+    assert N > batch_size
+
+    # Set up dtype
+    if cuda:
+        dtype = torch.cuda.FloatTensor
+    else:
+        if torch.cuda.is_available():
+            print("WARNING: You have a CUDA device, so you should probably set cuda=True")
+        dtype = torch.FloatTensor
+
+    # Set up dataloader
+    dataloader = torch.utils.data.DataLoader(imgs, batch_size=batch_size)
+
+    # Load inception model
+    inception_model = inception_v3(pretrained=True, transform_input=False).type(dtype)
+    inception_model.eval();
+    up = nn.Upsample(size=(299, 299), mode='bilinear').type(dtype)
+    def get_pred(x):
+        if resize:
+            x = up(x)
+        x = inception_model(x)
+        return F.softmax(x).data.cpu().numpy()
+
+    # Get predictions
+    preds = np.zeros((N, 1000))
+
+    for i, batch in enumerate(dataloader, 0):
+        batch = batch.type(dtype)
+        batchv = Variable(batch)
+        batch_size_i = batch.size()[0]
+
+        preds[i*batch_size:i*batch_size + batch_size_i] = get_pred(batchv)
+
+    # Now compute the mean kl-div
+    split_scores = []
+
+    for k in range(splits):
+        part = preds[k * (N // splits): (k+1) * (N // splits), :]
+        py = np.mean(part, axis=0)
+        scores = []
+        for i in range(part.shape[0]):
+            pyx = part[i, :]
+            scores.append(entropy(pyx, py))
+        split_scores.append(np.exp(np.mean(scores)))
+
+    return np.mean(split_scores), np.std(split_scores)
+
+class UnlabeledDataset(torch.utils.data.Dataset):
+    def __init__(self, folder, transform=None):
+        self.folder = folder
+        self.transform = transform
+        self.image_files = os.listdir(folder)
+
+    def __len__(self):
+        return len(self.image_files)
+
+    def __getitem__(self, idx):
+        image_file = self.image_files[idx]
+        image_path = os.path.join(self.folder, image_file)
+        image = io.imread(image_path)
+  
+        if self.transform:
+            image = self.transform(image)
+        return image
+    
+class IgnoreLabelDataset(torch.utils.data.Dataset):
+    def __init__(self, orig):
+        self.orig = orig
+
+    def __getitem__(self, index):
+        return self.orig[index][0]
+
+    def __len__(self):
+        return len(self.orig)
+
+
+if __name__ == '__main__':
+
+    # cifar = dset.CIFAR10(root='data/', download=True,
+    #                          transform=transforms.Compose([
+    #                              transforms.Resize(32),``
+    #                              transforms.ToTensor(),
+    #                              transforms.Normalize((0.5, 0.5, 0.5), (0.5, 0.5, 0.5))
+    #                          ])
+    # )
+
+    transform = transforms.Compose([
+        transforms.ToTensor(),
+        transforms.Normalize((0.5, 0.5, 0.5), (0.5, 0.5, 0.5))
+        ])
+
+
+    # set args
+    parser = argparse.ArgumentParser()
+    parser.add_argument('--data-root', type=str, default='/data/wyli/code/TinyDDPM/Output/unet_busi/Gens/')
+
+    args = parser.parse_args()
+
+    dataset = UnlabeledDataset(args.data_root, transform=transform)
+    
+    print ("Calculating Inception Score...")
+    print (inception_score(dataset, cuda=True, batch_size=1, resize=True, splits=10))
+
+

Diffusion_UKAN/released_models/readme.txt

+download released_models.zip and unzip here
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Diffusion_UKAN/requirements.txt

+pytorch-fid==0.30.0
+torch==2.3.0
+torchvision==0.18.0
+tqdm
+timm==0.9.16
+scikit-image==0.23.1
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Diffusion_UKAN/tools/resive_cvc.py

+import os
+from skimage import io, transform
+from skimage.util import img_as_ubyte
+import numpy as np
+
+# Define the source and destination directories
+src_dir = '/data/wyli/data/CVC-ClinicDB/Original/'
+dst_dir = '/data/wyli/data/cvc/images_64/'
+
+os.makedirs(dst_dir, exist_ok=True)
+
+# Get a list of all the image files in the source directory
+image_files = [f for f in os.listdir(src_dir) if os.path.isfile(os.path.join(src_dir, f))]
+
+# Define the size of the crop box
+crop_size = np.array([288 ,288])
+
+# Define the size of the resized image
+resize_size = (64, 64)
+
+for image_file in image_files:
+    # Load the image
+    image = io.imread(os.path.join(src_dir, image_file))
+    # print(image.shape)
+
+    # Calculate the center of the image
+    center = np.array(image.shape[:2]) // 2
+
+    # Calculate the start and end points of the crop box
+    start = center - crop_size // 2
+    end = start + crop_size
+
+    # Crop the image
+    cropped_image = img_as_ubyte(image[start[0]:end[0], start[1]:end[1]])
+
+    # Resize the cropped image
+    resized_image = transform.resize(cropped_image, resize_size, mode='reflect')
+
+    # Save the resized image to the destination directory
+    io.imsave(os.path.join(dst_dir, image_file), img_as_ubyte(resized_image))
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Diffusion_UKAN/tools/resize_busi.py

+import os
+from skimage import io, transform
+from skimage.util import img_as_ubyte
+import numpy as np
+
+# Define the source and destination directories
+src_dir = '/data/wyli/data/busi/images/'
+dst_dir = '/data/wyli/data/busi/images_64/'
+
+os.makedirs(dst_dir, exist_ok=True)
+
+# Get a list of all the image files in the source directory
+image_files = [f for f in os.listdir(src_dir) if os.path.isfile(os.path.join(src_dir, f))]
+
+# Define the size of the crop box
+crop_size = np.array([400 ,400])
+
+# Define the size of the resized image
+# resize_size = (64, 64)
+resize_size = (64, 64)
+
+for image_file in image_files:
+    # Load the image
+    image = io.imread(os.path.join(src_dir, image_file))
+    print(image.shape)
+
+
+    # Calculate the center of the image
+    center = np.array(image.shape[:2]) // 2
+
+    # Calculate the start and end points of the crop box
+    start = center - crop_size // 2
+    end = start + crop_size
+
+    # Crop the image
+    cropped_image = img_as_ubyte(image[start[0]:end[0], start[1]:end[1]])
+
+    # Resize the cropped image
+    resized_image = transform.resize(cropped_image, resize_size, mode='reflect')
+
+    # Save the resized image to the destination directory
+    io.imsave(os.path.join(dst_dir, image_file), img_as_ubyte(resized_image))
\ No newline at end of file

Diffusion_UKAN/tools/resize_glas.py

+import os
+from skimage import io, transform
+from skimage.util import img_as_ubyte
+import numpy as np
+import random
+
+# Define the source and destination directories
+src_dir = '/data/wyli/data/glas/images/'
+dst_dir = '/data/wyli/data/glas/images_64/'
+
+os.makedirs(dst_dir, exist_ok=True)
+
+# Get a list of all the image files in the source directory
+image_files = [f for f in os.listdir(src_dir) if os.path.isfile(os.path.join(src_dir, f))]
+
+# Define the size of the crop box
+crop_size = np.array([64, 64])
+
+# Define the number of crops per image
+K = 5
+
+for image_file in image_files:
+    # Load the image
+    image = io.imread(os.path.join(src_dir, image_file))
+
+    # Get the size of the image
+    image_size = np.array(image.shape[:2])
+
+    for i in range(K):
+        # Calculate a random start point for the crop box
+        start = np.array([random.randint(0, image_size[0] - crop_size[0]), random.randint(0, image_size[1] - crop_size[1])])
+
+        # Calculate the end point of the crop box
+        end = start + crop_size
+
+        # Crop the image
+        cropped_image = img_as_ubyte(image[start[0]:end[0], start[1]:end[1]])
+
+        # Save the cropped image to the destination directory
+        io.imsave(os.path.join(dst_dir, f"{image_file}_{i}.png"), cropped_image)
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Diffusion_UKAN/training_scripts/busi.sh

+##!/bin/bash
+source ~/miniconda3/etc/profile.d/conda.sh
+
+conda activate kan
+
+GPU=0
+MODEL='UKan_Hybrid'
+EXP_NME='UKan_cvc'
+SAVE_ROOT='./Output/'
+DATASET='busi'
+
+cd ../
+
+CUDA_VISIBLE_DEVICES=${GPU} python Main.py \
+--model ${MODEL} \
+--exp_nme ${EXP_NME}  \
+--batch_size 32  \
+--channel 64 \
+--dataset ${DATASET} \
+--epoch 5000 \
+--save_root ${SAVE_ROOT} 
+# --lr 1e-4 
+
+# calcuate FID and IS
+CUDA_VISIBLE_DEVICES=${GPU} python -m pytorch_fid "data/${DATASET}/images_64/" "${SAVE_ROOT}/${EXP_NME}/Gens" > "${SAVE_ROOT}/${EXP_NME}/FID.txt" 2>&1
+
+cd inception-score-pytorch
+
+CUDA_VISIBLE_DEVICES=${GPU} python inception_score.py --data-root "${SAVE_ROOT}/${EXP_NME}/Gens"  > "${SAVE_ROOT}/${EXP_NME}/IS.txt" 2>&1

Diffusion_UKAN/training_scripts/cvc.sh

+##!/bin/bash
+source ~/miniconda3/etc/profile.d/conda.sh
+
+conda activate kan
+
+GPU=0
+MODEL='UKan_Hybrid'
+EXP_NME='UKan_cvc'
+SAVE_ROOT='./Output/'
+DATASET='cvc'
+
+cd ../
+
+CUDA_VISIBLE_DEVICES=${GPU} python Main.py \
+--model ${MODEL} \
+--exp_nme ${EXP_NME}  \
+--batch_size 32  \
+--channel 64 \
+--dataset ${DATASET} \
+--epoch 1000 \
+--save_root ${SAVE_ROOT} 
+# --lr 1e-4 
+
+# calcuate FID and IS
+CUDA_VISIBLE_DEVICES=${GPU} python -m pytorch_fid "data/${DATASET}/images_64/" "${SAVE_ROOT}/${EXP_NME}/Gens" > "${SAVE_ROOT}/${EXP_NME}/FID.txt" 2>&1
+
+cd inception-score-pytorch
+
+CUDA_VISIBLE_DEVICES=${GPU} python inception_score.py --data-root "${SAVE_ROOT}/${EXP_NME}/Gens"  > "${SAVE_ROOT}/${EXP_NME}/IS.txt" 2>&1

Seg_UKAN/LICENSE

+MIT License
+
+Copyright (c) 2022 Jeya Maria Jose
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.