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"""AutoAugment data augmentation policy for ImageNet.
-- Begin license text.
MIT License
Copyright (c) 2018 Philip Popien
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
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copies of the Software, and to permit persons to whom the Software is
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The above copyright notice and this permission notice shall be included in all
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IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
SOFTWARE.
-- End license text.
Code adapted from https://github.com/DeepVoltaire/AutoAugment.
This module implements the fixed AutoAugment data augmentation policy for ImageNet provided in
Appendix A, Table 9 of reference [1]. It does not include any of the search code for augmentation
policies.
Reference:
[1] https://arxiv.org/abs/1805.09501
"""
import random
import numpy as np
from PIL import Image
from PIL import ImageEnhance
from PIL import ImageOps
_MAX_LEVEL = 10 # Maximum integer strength of an augmentation, if applicable.
class ImageNetPolicy:
"""Definition of an ImageNetPolicy.
Implements a fixed AutoAugment data augmentation policy targeted at
ImageNet training by randomly applying at runtime one of the 25 pre-defined
data augmentation sub-policies provided in Reference [1].
Usage example as a Pytorch Transform:
>>> transform=transforms.Compose([transforms.Resize(256),
>>> ImageNetPolicy(),
>>> transforms.ToTensor()])
"""
def __init__(self, fillcolor=(128, 128, 128)):
"""Initialize an ImageNetPolicy.
Args:
fillcolor (tuple): RGB color components of the color to be used for
filling when needed (default: (128, 128, 128), which
corresponds to gray).
"""
# Instantiate a list of sub-policies.
# Each entry of the list is a SubPolicy which consists of
# two augmentation operations,
# each of those parametrized as operation, probability, magnitude.
# Those two operations are applied sequentially on the image upon call.
self.policies = [
SubPolicy("posterize", 0.4, 8, "rotate", 0.6, 9, fillcolor),
SubPolicy("solarize", 0.6, 5, "autocontrast", 0.6, 5, fillcolor),
SubPolicy("equalize", 0.8, 8, "equalize", 0.6, 3, fillcolor),
SubPolicy("posterize", 0.6, 7, "posterize", 0.6, 6, fillcolor),
SubPolicy("equalize", 0.4, 7, "solarize", 0.2, 4, fillcolor),
SubPolicy("equalize", 0.4, 4, "rotate", 0.8, 8, fillcolor),
SubPolicy("solarize", 0.6, 3, "equalize", 0.6, 7, fillcolor),
SubPolicy("posterize", 0.8, 5, "equalize", 1.0, 2, fillcolor),
SubPolicy("rotate", 0.2, 3, "solarize", 0.6, 8, fillcolor),
SubPolicy("equalize", 0.6, 8, "posterize", 0.4, 6, fillcolor),
SubPolicy("rotate", 0.8, 8, "color", 0.4, 0, fillcolor),
SubPolicy("rotate", 0.4, 9, "equalize", 0.6, 2, fillcolor),
SubPolicy("equalize", 0.0, 7, "equalize", 0.8, 8, fillcolor),
SubPolicy("invert", 0.6, 4, "equalize", 1.0, 8, fillcolor),
SubPolicy("color", 0.6, 4, "contrast", 1.0, 8, fillcolor),
SubPolicy("rotate", 0.8, 8, "color", 1.0, 2, fillcolor),
SubPolicy("color", 0.8, 8, "solarize", 0.8, 7, fillcolor),
SubPolicy("sharpness", 0.4, 7, "invert", 0.6, 8, fillcolor),
SubPolicy("shearX", 0.6, 5, "equalize", 1.0, 9, fillcolor),
SubPolicy("color", 0.4, 0, "equalize", 0.6, 3, fillcolor),
SubPolicy("equalize", 0.4, 7, "solarize", 0.2, 4, fillcolor),
SubPolicy("solarize", 0.6, 5, "autocontrast", 0.6, 5, fillcolor),
SubPolicy("invert", 0.6, 4, "equalize", 1.0, 8, fillcolor),
SubPolicy("color", 0.6, 4, "contrast", 1.0, 8, fillcolor),
SubPolicy("equalize", 0.8, 8, "equalize", 0.6, 3, fillcolor),
]
def __call__(self, img):
"""Define call method for ImageNetPolicy class."""
policy_idx = random.randint(0, len(self.policies) - 1)
return self.policies[policy_idx](img)
def __repr__(self):
"""Define repr method for ImageNetPolicy class."""
return "ImageNetPolicy"
class SubPolicy:
"""Definition of a SubPolicy.
A SubPolicy consists of two augmentation operations,
each of those parametrized as operation, probability, magnitude.
The two operations are applied sequentially on the image upon call.
"""
def __init__(
self,
operation1,
probability1,
magnitude_idx1,
operation2,
probability2,
magnitude_idx2,
fillcolor,
):
"""Initialize a SubPolicy.
Args:
operation1 (str): Key specifying the first augmentation operation.
There are fourteen key values altogether (see supported_ops below
listing supported operations). probability1 (float): Probability
within [0., 1.] of applying the first augmentation operation.
magnitude_idx1 (int): Integer specifiying the strength of the first
operation as an index further used to derive the magnitude from a
range of possible values.
operation2 (str): Key specifying the second augmentation operation.
probability2 (float): Probability within [0., 1.] of applying the
second augmentation operation.
magnitude_idx2 (int): Integer specifiying the strength of the
second operation as an index further used to derive the magnitude
from a range of possible values.
fillcolor (tuple): RGB color components of the color to be used for
filling.
Returns:
"""
# List of supported operations for operation1 and operation2.
supported_ops = [
"shearX",
"shearY",
"translateX",
"translateY",
"rotate",
"color",
"posterize",
"solarize",
"contrast",
"sharpness",
"brightness",
"autocontrast",
"equalize",
"invert",
]
assert (operation1 in supported_ops) and (
operation2 in supported_ops
), "SubPolicy:one of oper1 or oper2 refers to an unsupported operation."
assert (
0.0 <= probability1 <= 1.0 and 0.0 <= probability2 <= 1.0
), "SubPolicy: prob1 and prob2 should be within [0., 1.]."
assert (
isinstance(magnitude_idx1, int) and 0 <= magnitude_idx1 <= 10
), "SubPolicy: idx1 should be specified as an integer within [0, 10]."
assert (
isinstance(magnitude_idx2, int) and 0 <= magnitude_idx2 <= 10
), "SubPolicy: idx2 should be specified as an integer within [0, 10]."
# Define a dictionary where each key refers to a specific type of
# augmentation and the corresponding value is a range of ten possible
# magnitude values for that augmentation.
num_levels = _MAX_LEVEL + 1
ranges = {
"shearX": np.linspace(0, 0.3, num_levels),
"shearY": np.linspace(0, 0.3, num_levels),
"translateX": np.linspace(0, 150 / 331, num_levels),
"translateY": np.linspace(0, 150 / 331, num_levels),
"rotate": np.linspace(0, 30, num_levels),
"color": np.linspace(0.0, 0.9, num_levels),
"posterize": np.round(np.linspace(8, 4, num_levels), 0).astype(
np.int
),
"solarize": np.linspace(256, 0, num_levels), # range [0, 256]
"contrast": np.linspace(0.0, 0.9, num_levels),
"sharpness": np.linspace(0.0, 0.9, num_levels),
"brightness": np.linspace(0.0, 0.9, num_levels),
"autocontrast": [0]
* num_levels, # This augmentation doesn't use magnitude parameter.
"equalize": [0]
* num_levels, # This augmentation doesn't use magnitude parameter.
"invert": [0]
* num_levels, # This augmentation doesn't use magnitude parameter.
}
def rotate_with_fill(img, magnitude):
"""Define rotation transformation with fill.
The input image is first rotated, then it is blended together with
a gray mask of the same size. Note that fillcolor as defined
elsewhere in this module doesn't apply here.
Args:
magnitude (float): rotation angle in degrees.
Returns:
rotated_filled (PIL Image): rotated image with gray filling for
disoccluded areas unveiled by the rotation.
"""
rotated = img.convert("RGBA").rotate(magnitude)
rotated_filled = Image.composite(
rotated, Image.new("RGBA", rotated.size, (128,) * 4), rotated
)
return rotated_filled.convert(img.mode)
# Define a dictionary of augmentation functions where each key refers
# to a specific type of augmentation and the corresponding value defines
# the augmentation itself using a lambda function.
# pylint: disable=unnecessary-lambda
func_dict = {
"shearX": lambda img, magnitude: img.transform(
img.size,
Image.AFFINE,
(1, magnitude * random.choice([-1, 1]), 0, 0, 1, 0),
Image.BICUBIC,
fillcolor=fillcolor,
),
"shearY": lambda img, magnitude: img.transform(
img.size,
Image.AFFINE,
(1, 0, 0, magnitude * random.choice([-1, 1]), 1, 0),
Image.BICUBIC,
fillcolor=fillcolor,
),
"translateX": lambda img, magnitude: img.transform(
img.size,
Image.AFFINE,
(
1,
0,
magnitude * img.size[0] * random.choice([-1, 1]),
0,
1,
0,
),
fillcolor=fillcolor,
),
"translateY": lambda img, magnitude: img.transform(
img.size,
Image.AFFINE,
(
1,
0,
0,
0,
1,
magnitude * img.size[1] * random.choice([-1, 1]),
),
fillcolor=fillcolor,
),
"rotate": lambda img, magnitude: rotate_with_fill(img, magnitude),
"color": lambda img, magnitude: ImageEnhance.Color(img).enhance(
1 + magnitude * random.choice([-1, 1])
),
"posterize": lambda img, magnitude: ImageOps.posterize(
img, magnitude
),
"solarize": lambda img, magnitude: ImageOps.solarize(
img, magnitude
),
"contrast": lambda img, magnitude: ImageEnhance.Contrast(
img
).enhance(1 + magnitude * random.choice([-1, 1])),
"sharpness": lambda img, magnitude: ImageEnhance.Sharpness(
img
).enhance(1 + magnitude * random.choice([-1, 1])),
"brightness": lambda img, magnitude: ImageEnhance.Brightness(
img
).enhance(1 + magnitude * random.choice([-1, 1])),
"autocontrast": lambda img, magnitude: ImageOps.autocontrast(img),
"equalize": lambda img, magnitude: ImageOps.equalize(img),
"invert": lambda img, magnitude: ImageOps.invert(img),
}
# Store probability, function and magnitude of the first augmentation
# for the sub-policy.
self.probability1 = probability1
self.operation1 = func_dict[operation1]
self.magnitude1 = ranges[operation1][magnitude_idx1]
# Store probability, function and magnitude of the second augmentation
# for the sub-policy.
self.probability2 = probability2
self.operation2 = func_dict[operation2]
self.magnitude2 = ranges[operation2][magnitude_idx2]
def __call__(self, img):
"""Define call method for SubPolicy class."""
# Randomly apply operation 1.
if random.random() < self.probability1:
img = self.operation1(img, self.magnitude1)
# Randomly apply operation 2.
if random.random() < self.probability2:
img = self.operation2(img, self.magnitude2)
return img
# Copyright (c) 2022, NVIDIA CORPORATION. All rights reserved.
"""BERT Style dataset."""
import numpy as np
import torch
from megatron import (
get_args,
get_tokenizer,
mpu,
print_rank_0
)
from megatron.data.dataset_utils import (
get_samples_mapping,
get_a_and_b_segments,
truncate_segments,
create_tokens_and_tokentypes,
create_masked_lm_predictions
)
class BertDataset(torch.utils.data.Dataset):
def __init__(self, name, indexed_dataset, data_prefix,
num_epochs, max_num_samples, masked_lm_prob,
max_seq_length, short_seq_prob, seed, binary_head):
# Params to store.
self.name = name
self.seed = seed
self.masked_lm_prob = masked_lm_prob
self.max_seq_length = max_seq_length
self.binary_head = binary_head
# Dataset.
self.indexed_dataset = indexed_dataset
# Build the samples mapping.
self.samples_mapping = get_samples_mapping(self.indexed_dataset,
data_prefix,
num_epochs,
max_num_samples,
self.max_seq_length - 3, # account for added tokens
short_seq_prob,
self.seed,
self.name,
self.binary_head)
# Vocab stuff.
tokenizer = get_tokenizer()
self.vocab_id_list = list(tokenizer.inv_vocab.keys())
self.vocab_id_to_token_dict = tokenizer.inv_vocab
self.cls_id = tokenizer.cls
self.sep_id = tokenizer.sep
self.mask_id = tokenizer.mask
self.pad_id = tokenizer.pad
def __len__(self):
return self.samples_mapping.shape[0]
def __getitem__(self, idx):
args = get_args()
start_idx, end_idx, seq_length = self.samples_mapping[idx]
sample = [self.indexed_dataset[i] for i in range(start_idx, end_idx)]
# Note that this rng state should be numpy and not python since
# python randint is inclusive whereas the numpy one is exclusive.
# We % 2**32 since numpy requres the seed to be between 0 and 2**32 - 1
np_rng = np.random.RandomState(seed=((self.seed + idx) % 2**32))
train_sample = build_training_sample(sample, seq_length,
self.max_seq_length, # needed for padding
self.vocab_id_list,
self.vocab_id_to_token_dict,
self.cls_id, self.sep_id,
self.mask_id, self.pad_id,
self.masked_lm_prob, np_rng,
self.binary_head)
if args.return_data_index:
train_sample['index'] = np.array([idx], dtype=np.int64)
return train_sample
def build_training_sample(sample,
target_seq_length, max_seq_length,
vocab_id_list, vocab_id_to_token_dict,
cls_id, sep_id, mask_id, pad_id,
masked_lm_prob, np_rng, binary_head):
"""Biuld training sample.
Arguments:
sample: A list of sentences in which each sentence is a list token ids.
target_seq_length: Desired sequence length.
max_seq_length: Maximum length of the sequence. All values are padded to
this length.
vocab_id_list: List of vocabulary ids. Used to pick a random id.
vocab_id_to_token_dict: A dictionary from vocab ids to text tokens.
cls_id: Start of example id.
sep_id: Separator id.
mask_id: Mask token id.
pad_id: Padding token id.
masked_lm_prob: Probability to mask tokens.
np_rng: Random number genenrator. Note that this rng state should be
numpy and not python since python randint is inclusive for
the opper bound whereas the numpy one is exclusive.
"""
if binary_head:
# We assume that we have at least two sentences in the sample
assert len(sample) > 1
assert target_seq_length <= max_seq_length
# Divide sample into two segments (A and B).
if binary_head:
tokens_a, tokens_b, is_next_random = get_a_and_b_segments(sample,
np_rng)
else:
tokens_a = []
for j in range(len(sample)):
tokens_a.extend(sample[j])
tokens_b = []
is_next_random = False
# Truncate to `target_sequence_length`.
max_num_tokens = target_seq_length
truncated = truncate_segments(tokens_a, tokens_b, len(tokens_a),
len(tokens_b), max_num_tokens, np_rng)
# Build tokens and toketypes.
tokens, tokentypes = create_tokens_and_tokentypes(tokens_a, tokens_b,
cls_id, sep_id)
# Masking.
max_predictions_per_seq = masked_lm_prob * max_num_tokens
(tokens, masked_positions, masked_labels, _, _) = create_masked_lm_predictions(
tokens, vocab_id_list, vocab_id_to_token_dict, masked_lm_prob,
cls_id, sep_id, mask_id, max_predictions_per_seq, np_rng)
# Padding.
tokens_np, tokentypes_np, labels_np, padding_mask_np, loss_mask_np \
= pad_and_convert_to_numpy(tokens, tokentypes, masked_positions,
masked_labels, pad_id, max_seq_length)
train_sample = {
'text': tokens_np,
'types': tokentypes_np,
'labels': labels_np,
'is_random': int(is_next_random),
'loss_mask': loss_mask_np,
'padding_mask': padding_mask_np,
'truncated': int(truncated)}
return train_sample
def pad_and_convert_to_numpy(tokens, tokentypes, masked_positions,
masked_labels, pad_id, max_seq_length):
"""Pad sequences and convert them to numpy."""
# Some checks.
num_tokens = len(tokens)
padding_length = max_seq_length - num_tokens
assert padding_length >= 0, \
f"num_tokens ({num_tokens}) is greater than " \
"max_seq_length ({max_seq_length})."
assert len(tokentypes) == num_tokens
assert len(masked_positions) == len(masked_labels)
# Tokens and token types.
filler = [pad_id] * padding_length
tokens_np = np.array(tokens + filler, dtype=np.int64)
tokentypes_np = np.array(tokentypes + filler, dtype=np.int64)
# Padding mask.
padding_mask_np = np.array([1] * num_tokens + [0] * padding_length,
dtype=np.int64)
# Lables and loss mask.
labels = [-1] * max_seq_length
loss_mask = [0] * max_seq_length
for i in range(len(masked_positions)):
assert masked_positions[i] < num_tokens
labels[masked_positions[i]] = masked_labels[i]
loss_mask[masked_positions[i]] = 1
labels_np = np.array(labels, dtype=np.int64)
loss_mask_np = np.array(loss_mask, dtype=np.int64)
return tokens_np, tokentypes_np, labels_np, padding_mask_np, loss_mask_np
import os
import time
import numpy as np
import torch
from megatron import get_args, get_tokenizer, print_rank_0
from megatron.core import mpu, tensor_parallel
from megatron.data.dataset_utils import create_masked_lm_predictions, \
pad_and_convert_to_numpy
from megatron.data.data_samplers import MegatronPretrainingSampler
from deepspeed.accelerator import get_accelerator
def make_attention_mask(source_block, target_block):
"""
Returns a 2-dimensional (2-D) attention mask
:param source_block: 1-D array
:param target_block: 1-D array
"""
mask = (target_block[None, :] >= 1) * (source_block[:, None] >= 1)
mask = mask.astype(np.int64)
# (source_length, target_length)
return mask
def get_one_epoch_dataloader(dataset, micro_batch_size=None):
"""Specifically one epoch to be used in an indexing job."""
args = get_args()
if micro_batch_size is None:
micro_batch_size = args.micro_batch_size
num_workers = args.num_workers
# Use megatron's sampler with consumed samples set to 0 as
# this is only for evaluation and don't intend to resume half way.
# Also, set the drop last to false as don't intend to remove
# the last batch
batch_sampler = MegatronPretrainingSampler(
total_samples=len(dataset),
consumed_samples=0,
micro_batch_size=args.micro_batch_size,
data_parallel_rank=mpu.get_data_parallel_rank(),
data_parallel_size=mpu.get_data_parallel_world_size(),
drop_last=False)
return torch.utils.data.DataLoader(dataset,
batch_sampler=batch_sampler,
num_workers=num_workers,
pin_memory=True)
def get_ict_batch(data_iterator):
# Items and their type.
keys = ['query_tokens', 'query_mask',
'context_tokens', 'context_mask', 'block_data']
datatype = torch.int64
# Broadcast data.
if data_iterator is None:
data = None
else:
data = next(data_iterator)
data_b = tensor_parallel.broadcast_data(keys, data, datatype)
# Unpack.
query_tokens = data_b['query_tokens'].long()
query_mask = data_b['query_mask'] < 0.5
context_tokens = data_b['context_tokens'].long()
context_mask = data_b['context_mask'] < 0.5
block_indices = data_b['block_data'].long()
return query_tokens, query_mask,\
context_tokens, context_mask, block_indices
def join_str_list(str_list):
"""Join a list of strings, handling spaces appropriately"""
result = ""
for s in str_list:
if s.startswith("##"):
result += s[2:]
else:
result += " " + s
return result
class BlockSampleData(object):
"""A struct for fully describing a fixed-size block of data as used in REALM
:param start_idx: for first sentence of the block
:param end_idx: for last sentence of the block (may be partially truncated in sample construction)
:param doc_idx: the index of the document from which the block comes in the original indexed dataset
:param block_idx: a unique integer identifier given to every block.
"""
def __init__(self, start_idx, end_idx, doc_idx, block_idx):
self.start_idx = start_idx
self.end_idx = end_idx
self.doc_idx = doc_idx
self.block_idx = block_idx
def as_array(self):
return np.array([self.start_idx, self.end_idx, self.doc_idx, self.block_idx]).astype(np.int64)
def as_tuple(self):
return self.start_idx, self.end_idx, self.doc_idx, self.block_idx
class BlockSamplesMapping(object):
def __init__(self, mapping_array):
# make sure that the array is compatible with BlockSampleData
assert mapping_array.shape[1] == 4
self.mapping_array = mapping_array
def __len__(self):
return self.mapping_array.shape[0]
def __getitem__(self, idx):
"""Get the data associated with an indexed sample."""
sample_data = BlockSampleData(*self.mapping_array[idx])
return sample_data
def get_block_samples_mapping(block_dataset, title_dataset, data_prefix, num_epochs,
max_num_samples, max_seq_length, seed, name, use_one_sent_docs=False):
"""Get samples mapping for a dataset over fixed size blocks. This function also requires
a dataset of the titles for the source documents since their lengths must be taken into account.
:return: samples_mapping (BlockSamplesMapping)
"""
if not num_epochs:
if not max_num_samples:
raise ValueError("Need to specify either max_num_samples "
"or num_epochs")
num_epochs = np.iinfo(np.int32).max - 1
if not max_num_samples:
max_num_samples = np.iinfo(np.int64).max - 1
# Filename of the index mapping
indexmap_filename = data_prefix
indexmap_filename += '_{}_indexmap'.format(name)
if num_epochs != (np.iinfo(np.int32).max - 1):
indexmap_filename += '_{}ep'.format(num_epochs)
if max_num_samples != (np.iinfo(np.int64).max - 1):
indexmap_filename += '_{}mns'.format(max_num_samples)
indexmap_filename += '_{}msl'.format(max_seq_length)
indexmap_filename += '_{}s'.format(seed)
if use_one_sent_docs:
indexmap_filename += '_1sentok'
indexmap_filename += '.npy'
# Build the indexed mapping if not exist.
if mpu.get_data_parallel_rank() == 0 and \
not os.path.isfile(indexmap_filename):
print(' > WARNING: could not find index map file {}, building '
'the indices on rank 0 ...'.format(indexmap_filename))
# Make sure the types match the helpers input types.
assert block_dataset.doc_idx.dtype == np.int64
assert block_dataset.sizes.dtype == np.int32
# Build samples mapping
verbose = torch.distributed.get_rank() == 0
start_time = time.time()
print_rank_0(' > building samples index mapping for {} ...'.format(
name))
from megatron.data import helpers
mapping_array = helpers.build_blocks_mapping(
block_dataset.doc_idx,
block_dataset.sizes,
title_dataset.sizes,
num_epochs,
max_num_samples,
max_seq_length - 3, # account for added tokens
seed,
verbose,
use_one_sent_docs)
print_rank_0(' > done building samples index mapping')
np.save(indexmap_filename, mapping_array, allow_pickle=True)
print_rank_0(' > saved the index mapping in {}'.format(
indexmap_filename))
# Make sure all the ranks have built the mapping
print_rank_0(' > elapsed time to build and save samples mapping '
'(seconds): {:4f}'.format(
time.time() - start_time))
# This should be a barrier but nccl barrier assumes
# device_index=rank which is not the case for model
# parallel case
counts = get_accelerator().LongTensor([1])
torch.distributed.all_reduce(counts, group=mpu.get_data_parallel_group())
assert counts[0].item() == torch.distributed.get_world_size(
group=mpu.get_data_parallel_group())
# Load indexed dataset.
print_rank_0(' > loading indexed mapping from {}'.format(
indexmap_filename))
start_time = time.time()
mapping_array = np.load(indexmap_filename, allow_pickle=True, mmap_mode='r')
samples_mapping = BlockSamplesMapping(mapping_array)
print_rank_0(' loaded indexed file in {:3.3f} seconds'.format(
time.time() - start_time))
print_rank_0(' total number of samples: {}'.format(
mapping_array.shape[0]))
return samples_mapping
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