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ModelZoo
CIRI-deep_tensorflow
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ecf80971
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ecf80971
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Dec 05, 2024
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dcuai
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# cirideep
# cirideep
## 论文
## 论文
...
@@ -63,9 +62,7 @@ pip install -r requirements.txt -i http://mirrors.aliyun.com/pypi/simple/ --trus
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@@ -63,9 +62,7 @@ pip install -r requirements.txt -i http://mirrors.aliyun.com/pypi/simple/ --trus
python CIRIdeep.py predict -geneExp_absmax ./demo/RBPmax_totalRNA.tsv -seqFeature ./demo/cisfeature.tsv -splicing_max ./demo/splicingamount_max.tsv -predict_list ./demo/predict_list.txt -model_path ./models/CIRIdeep.h5 -outdir ./outdir -RBP_dir ./demo/RBPexp_total -splicing_dir ./demo/splicingamount
python CIRIdeep.py predict -geneExp_absmax ./demo/RBPmax_totalRNA.tsv -seqFeature ./demo/cisfeature.tsv -splicing_max ./demo/splicingamount_max.tsv -predict_list ./demo/predict_list.txt -model_path ./models/CIRIdeep.h5 -outdir ./outdir -RBP_dir ./demo/RBPexp_total -splicing_dir ./demo/splicingamount
```
```
输出文件在outputdir下

...
@@ -75,29 +72,34 @@ python CIRIdeep.py predict -geneExp_absmax ./demo/RBPmax_totalRNA.tsv -seqFeatur
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@@ -75,29 +72,34 @@ python CIRIdeep.py predict -geneExp_absmax ./demo/RBPmax_totalRNA.tsv -seqFeatur
python CIRIdeep.py predict -geneExp_absmax ./demo/RBPmax_polyA.tsv -seqFeature ./demo/cisfeature.tsv -predict_list ./demo/predict_list.txt -model_path ./models/CIRIdeepA.h5 -outdir ./outdir -RBP_dir ./demo/RBPexp_polyA --CIRIdeepA
python CIRIdeep.py predict -geneExp_absmax ./demo/RBPmax_polyA.tsv -seqFeature ./demo/cisfeature.tsv -predict_list ./demo/predict_list.txt -model_path ./models/CIRIdeepA.h5 -outdir ./outdir -RBP_dir ./demo/RBPexp_polyA --CIRIdeepA
```
```
输出文件在outputdir下

## result
**使用CIRI-deep进行预测**
输出文件在outputdir下

**用CIRI-deepA进行预测**
输出文件在outputdir下

# 应用场景
### 精度
无
## 算法类别
## 应用场景
ai for science
##
行业
##
# 算法类别
科研
ai for science
##
热
门
应用
##
#
热
点
应用
行业
科研 教育 医疗
科研 教育 医疗
# 源码仓库及问题反馈
#
# 源码仓库及问题反馈
http://developer.sourcefind.cn/codes/modelzoo/cirideep.git
http://developer.sourcefind.cn/codes/modelzoo/cirideep.git
# 参考资料
#
# 参考资料
git clone https://github.com/gyjames/CIRIdeep.git
git clone https://github.com/gyjames/CIRIdeep.git
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