Commit ecf80971 authored by dcuai's avatar dcuai
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Update README.md

parent f8f189bf
# cirideep # cirideep
## 论文 ## 论文
...@@ -63,9 +62,7 @@ pip install -r requirements.txt -i http://mirrors.aliyun.com/pypi/simple/ --trus ...@@ -63,9 +62,7 @@ pip install -r requirements.txt -i http://mirrors.aliyun.com/pypi/simple/ --trus
python CIRIdeep.py predict -geneExp_absmax ./demo/RBPmax_totalRNA.tsv -seqFeature ./demo/cisfeature.tsv -splicing_max ./demo/splicingamount_max.tsv -predict_list ./demo/predict_list.txt -model_path ./models/CIRIdeep.h5 -outdir ./outdir -RBP_dir ./demo/RBPexp_total -splicing_dir ./demo/splicingamount python CIRIdeep.py predict -geneExp_absmax ./demo/RBPmax_totalRNA.tsv -seqFeature ./demo/cisfeature.tsv -splicing_max ./demo/splicingamount_max.tsv -predict_list ./demo/predict_list.txt -model_path ./models/CIRIdeep.h5 -outdir ./outdir -RBP_dir ./demo/RBPexp_total -splicing_dir ./demo/splicingamount
``` ```
输出文件在outputdir下
![Alt text](./images/image3.png)
...@@ -75,29 +72,34 @@ python CIRIdeep.py predict -geneExp_absmax ./demo/RBPmax_totalRNA.tsv -seqFeatur ...@@ -75,29 +72,34 @@ python CIRIdeep.py predict -geneExp_absmax ./demo/RBPmax_totalRNA.tsv -seqFeatur
python CIRIdeep.py predict -geneExp_absmax ./demo/RBPmax_polyA.tsv -seqFeature ./demo/cisfeature.tsv -predict_list ./demo/predict_list.txt -model_path ./models/CIRIdeepA.h5 -outdir ./outdir -RBP_dir ./demo/RBPexp_polyA --CIRIdeepA python CIRIdeep.py predict -geneExp_absmax ./demo/RBPmax_polyA.tsv -seqFeature ./demo/cisfeature.tsv -predict_list ./demo/predict_list.txt -model_path ./models/CIRIdeepA.h5 -outdir ./outdir -RBP_dir ./demo/RBPexp_polyA --CIRIdeepA
``` ```
输出文件在outputdir下
![Alt text](./images/image4.png)
## result
**使用CIRI-deep进行预测**
输出文件在outputdir下
![Alt text](./images/image3.png)
**用CIRI-deepA进行预测**
输出文件在outputdir下
![Alt text](./images/image4.png)
# 应用场景 ### 精度
## 算法类别 ## 应用场景
ai for science
## 行业 ### 算法类别
科研 ai for science
## 应用 ###应用行业
科研 教育 医疗 科研 教育 医疗
# 源码仓库及问题反馈 ## 源码仓库及问题反馈
http://developer.sourcefind.cn/codes/modelzoo/cirideep.git http://developer.sourcefind.cn/codes/modelzoo/cirideep.git
# 参考资料 ## 参考资料
git clone https://github.com/gyjames/CIRIdeep.git git clone https://github.com/gyjames/CIRIdeep.git
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