Basically, the input files are similar to CIRIdeep, excluding splicing amount related files. **Notably**, the `RBP max value file` file is different from that used in CIRIdeep and all the expression values should be derived from poly(A) selected RNA-seq data. Still, when using CIRIdeep(A), the order of RBP expression of each sample should keep exactly the same with `RBP max value file`.
Basically, the input files are similar to CIRIdeep, excluding splicing amount related files. **Notably**, the `RBP max value file` file is different from that used in CIRIdeep and all the expression values should be derived from poly(A) selected RNA-seq data. Still, when using CIRIdeep(A), the order of RBP expression of each sample should keep exactly the same with `RBP max value file`.
