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---
layout: default
title: K Means using PyTorch
---
PyTorch implementation of kmeans for utilizing GPU
![Alt Text](https://media.giphy.com/media/WsYIwIHHXUcuiR8BeS/giphy.gif)
# Getting Started
```
import torch
import numpy as np
from kmeans_pytorch import kmeans
# data
data_size, dims, num_clusters = 1000, 2, 3
x = np.random.randn(data_size, dims) / 6
x = torch.from_numpy(x)
# kmeans
cluster_ids_x, cluster_centers = kmeans(
X=x, num_clusters=num_clusters, distance='euclidean', device=torch.device('cuda:0')
)
```
see [`example.ipynb`](https://github.com/subhadarship/kmeans_pytorch/blob/master/example.ipynb) for a more elaborate example
# Requirements
* [PyTorch](http://pytorch.org/) version >= 1.0.0
* Python version >= 3.6
# Installation
install with `pip`:
```
pip install kmeans-pytorch
```
**Installing from source**
To install from source and develop locally:
```
git clone https://github.com/subhadarship/kmeans_pytorch
cd kmeans_pytorch
pip install --editable .
```
# CPU vs GPU
see [`cpu_vs_gpu.ipynb`](https://github.com/subhadarship/kmeans_pytorch/blob/master/cpu_vs_gpu.ipynb) for a comparison between CPU and GPU
# Notes
- useful when clustering large number of samples
- utilizes GPU for faster matrix computations
- support euclidean and cosine distances (for now)
# Credits
- This implementation closely follows the style of [this](https://github.com/overshiki/kmeans_pytorch)
- Documentation is done using the awesome theme [jekyllbook](https://github.com/ebetica/jekyllbook)
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kmeans_pytorch/docs/static/FontAwesome/fonts/fontawesome-webfont.svg 0 → 100644
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kmeans_pytorch/docs/static/book.js 0 → 100644
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kmeans_pytorch/docs/static/clipboard.min.js 0 → 100644
View file @ 0063a668
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kmeans_pytorch/docs/static/css/chrome.css 0 → 100644
View file @ 0063a668
/* CSS for UI elements (a.k.a. chrome) */
@import 'variables.css';
::-webkit-scrollbar {
background: var(--bg);
}
::-webkit-scrollbar-thumb {
background: var(--scrollbar);
}
html {
scrollbar-color: var(--scrollbar) var(--bg);
}
#searchresults a,
.content a:link,
a:visited,
a > .hljs {
color: var(--links);
}
/* Menu Bar */
#menu-bar {
position: -webkit-sticky;
position: sticky;
top: 0;
z-index: 101;
margin: auto calc(0px - var(--page-padding));
}
#menu-bar > #menu-bar-sticky-container {
display: flex;
flex-wrap: wrap;
background-color: var(--bg);
border-bottom-color: var(--bg);
border-bottom-width: 1px;
border-bottom-style: solid;
}
.js #menu-bar > #menu-bar-sticky-container {
transition: transform 0.3s;
}
#menu-bar.bordered > #menu-bar-sticky-container {
border-bottom-color: var(--table-border-color);
}
#menu-bar i, #menu-bar .icon-button {
position: relative;
padding: 0 8px;
z-index: 10;
line-height: var(--menu-bar-height);
cursor: pointer;
transition: color 0.5s;
}
@media only screen and (max-width: 420px) {
#menu-bar i, #menu-bar .icon-button {
padding: 0 5px;
}
}
.icon-button {
border: none;
background: none;
padding: 0;
color: inherit;
}
.icon-button i {
margin: 0;
}
.right-buttons {
margin: 0 15px;
}
.right-buttons a {
text-decoration: none;
}
html:not(.sidebar-visible) #menu-bar:not(:hover).folded > #menu-bar-sticky-container {
transform: translateY(calc(-10px - var(--menu-bar-height)));
}
.left-buttons {
display: flex;
margin: 0 5px;
}
.no-js .left-buttons {
display: none;
}
.menu-title {
display: inline-block;
font-weight: 200;
font-size: 2rem;
line-height: var(--menu-bar-height);
text-align: center;
margin: 0;
flex: 1;
white-space: nowrap;
overflow: hidden;
text-overflow: ellipsis;
}
.js .menu-title {
cursor: pointer;
}
.menu-bar,
.menu-bar:visited,
.nav-chapters,
.nav-chapters:visited,
.mobile-nav-chapters,
.mobile-nav-chapters:visited,
.menu-bar .icon-button,
.menu-bar a i {
color: var(--icons);
}
.menu-bar i:hover,
.menu-bar .icon-button:hover,
.nav-chapters:hover,
.mobile-nav-chapters i:hover {
color: var(--icons-hover);
}
/* Nav Icons */
.nav-chapters {
font-size: 2.5em;
text-align: center;
text-decoration: none;
position: fixed;
top: 0;
bottom: 0;
margin: 0;
max-width: 150px;
min-width: 90px;
display: flex;
justify-content: center;
align-content: center;
flex-direction: column;
transition: color 0.5s, background-color 0.5s;
}
.nav-chapters:hover {
text-decoration: none;
background-color: var(--theme-hover);
transition: background-color 0.15s, color 0.15s;
}
.nav-wrapper {
margin-top: 50px;
display: none;
}
.mobile-nav-chapters {
font-size: 2.5em;
text-align: center;
text-decoration: none;
width: 90px;
border-radius: 5px;
background-color: var(--sidebar-bg);
}
.previous {
float: left;
}
.next {
float: right;
right: var(--page-padding);
}
@media only screen and (max-width: 1080px) {
.nav-wide-wrapper { display: none; }
.nav-wrapper { display: block; }
}
@media only screen and (max-width: 1380px) {
.sidebar-visible .nav-wide-wrapper { display: none; }
.sidebar-visible .nav-wrapper { display: block; }
}
/* Inline code */
:not(pre) > .hljs {
display: inline;
padding: 0.1em 0.3em;
border-radius: 3px;
}
:not(pre):not(a) > .hljs {
color: var(--inline-code-color);
overflow-x: initial;
}
a:hover > .hljs {
text-decoration: underline;
}
pre {
position: relative;
}
pre > .buttons {
position: absolute;
z-index: 100;
right: 5px;
top: 5px;
color: var(--sidebar-fg);
cursor: pointer;
}
pre > .buttons :hover {
color: var(--sidebar-active);
}
pre > .buttons i {
margin-left: 8px;
}
pre > .buttons button {
color: inherit;
background: transparent;
border: none;
cursor: inherit;
}
pre > .result {
margin-top: 10px;
}
/* Search */
#searchresults a {
text-decoration: none;
}
mark {
border-radius: 2px;
padding: 0 3px 1px 3px;
margin: 0 -3px -1px -3px;
background-color: var(--search-mark-bg);
transition: background-color 300ms linear;
cursor: pointer;
}
mark.fade-out {
background-color: rgba(0,0,0,0) !important;
cursor: auto;
}
.searchbar-outer {
margin-left: auto;
margin-right: auto;
max-width: var(--content-max-width);
}
#searchbar {
width: 100%;
margin: 5px auto 0px auto;
padding: 10px 16px;
transition: box-shadow 300ms ease-in-out;
border: 1px solid var(--searchbar-border-color);
border-radius: 3px;
background-color: var(--searchbar-bg);
color: var(--searchbar-fg);
}
#searchbar:focus,
#searchbar.active {
box-shadow: 0 0 3px var(--searchbar-shadow-color);
}
.searchresults-header {
font-weight: bold;
font-size: 1em;
padding: 18px 0 0 5px;
color: var(--searchresults-header-fg);
}
.searchresults-outer {
margin-left: auto;
margin-right: auto;
max-width: var(--content-max-width);
border-bottom: 1px dashed var(--searchresults-border-color);
}
ul#searchresults {
list-style: none;
padding-left: 20px;
}
ul#searchresults li {
margin: 10px 0px;
padding: 2px;
border-radius: 2px;
}
ul#searchresults li.focus {
background-color: var(--searchresults-li-bg);
}
ul#searchresults span.teaser {
display: block;
clear: both;
margin: 5px 0 0 20px;
font-size: 0.8em;
}
ul#searchresults span.teaser em {
font-weight: bold;
font-style: normal;
}
/* Sidebar */
.sidebar {
position: fixed;
left: 0;
top: 0;
bottom: 0;
width: var(--sidebar-width);
font-size: 0.875em;
box-sizing: border-box;
-webkit-overflow-scrolling: touch;
overscroll-behavior-y: contain;
background-color: var(--sidebar-bg);
color: var(--sidebar-fg);
}
.sidebar-resizing {
-moz-user-select: none;
-webkit-user-select: none;
-ms-user-select: none;
user-select: none;
}
.js:not(.sidebar-resizing) .sidebar {
transition: transform 0.3s; /* Animation: slide away */
}
.sidebar code {
line-height: 2em;
}
.sidebar .sidebar-scrollbox {
overflow-y: auto;
position: absolute;
top: 0;
bottom: 0;
left: 0;
right: 0;
padding: 10px 10px;
}
.sidebar .sidebar-resize-handle {
position: absolute;
cursor: col-resize;
width: 0;
right: 0;
top: 0;
bottom: 0;
}
.js .sidebar .sidebar-resize-handle {
cursor: col-resize;
width: 5px;
}
.sidebar-hidden .sidebar {
transform: translateX(calc(0px - var(--sidebar-width)));
}
.sidebar::-webkit-scrollbar {
background: var(--sidebar-bg);
}
.sidebar::-webkit-scrollbar-thumb {
background: var(--scrollbar);
}
.sidebar-visible .page-wrapper {
transform: translateX(var(--sidebar-width));
}
@media only screen and (min-width: 620px) {
.sidebar-visible .page-wrapper {
transform: none;
margin-left: var(--sidebar-width);
}
}
.chapter {
list-style: none outside none;
padding-left: 0;
line-height: 2.2em;
}
.chapter ol {
width: 100%;
}
.chapter li {
display: flex;
color: var(--sidebar-non-existant);
}
.chapter li a {
display: block;
padding: 0;
text-decoration: none;
color: var(--sidebar-fg);
}
.chapter li a:hover {
color: var(--sidebar-active);
}
.chapter li a.active {
color: var(--sidebar-active);
}
.chapter li > a.toggle {
cursor: pointer;
display: block;
margin-left: auto;
padding: 0 10px;
user-select: none;
opacity: 0.68;
}
.chapter li > a.toggle div {
transition: transform 0.5s;
}
/* collapse the section */
.chapter li:not(.expanded) + li > ol {
display: none;
}
.chapter li.expanded > a.toggle div {
transform: rotate(90deg);
}
.spacer {
width: 100%;
height: 3px;
margin: 5px 0px;
}
.chapter .spacer {
background-color: var(--sidebar-spacer);
}
@media (-moz-touch-enabled: 1), (pointer: coarse) {
.chapter li a { padding: 5px 0; }
.spacer { margin: 10px 0; }
}
.section {
list-style: none outside none;
padding-left: 20px;
line-height: 1.9em;
}
/* Theme Menu Popup */
.theme-popup {
position: absolute;
left: 10px;
top: var(--menu-bar-height);
z-index: 1000;
border-radius: 4px;
font-size: 0.7em;
color: var(--fg);
background: var(--theme-popup-bg);
border: 1px solid var(--theme-popup-border);
margin: 0;
padding: 0;
list-style: none;
display: none;
}
.theme-popup .default {
color: var(--icons);
}
.theme-popup .theme {
width: 100%;
border: 0;
margin: 0;
padding: 2px 10px;
line-height: 25px;
white-space: nowrap;
text-align: left;
cursor: pointer;
color: inherit;
background: inherit;
font-size: inherit;
}
.theme-popup .theme:hover {
background-color: var(--theme-hover);
}
.theme-popup .theme:hover:first-child,
.theme-popup .theme:hover:last-child {
border-top-left-radius: inherit;
border-top-right-radius: inherit;
}
kmeans_pytorch/docs/static/css/general.css 0 → 100644
View file @ 0063a668
/* Base styles and content styles */
@import 'variables.css';
:root {
/* Browser default font-size is 16px, this way 1 rem = 10px */
font-size: 62.5%;
}
html {
font-family: "Open Sans", sans-serif;
color: var(--fg);
background-color: var(--bg);
text-size-adjust: none;
}
body {
margin: 0;
font-size: 1.6rem;
overflow-x: hidden;
}
code {
font-family: "Source Code Pro", Consolas, "Ubuntu Mono", Menlo, "DejaVu Sans Mono", monospace, monospace !important;
font-size: 0.875em; /* please adjust the ace font size accordingly in editor.js */
}
.left { float: left; }
.right { float: right; }
.boring { opacity: 0.6; }
.hide-boring .boring { display: none; }
.hidden { display: none; }
h2, h3 { margin-top: 2.5em; }
h4, h5 { margin-top: 2em; }
.header + .header h3,
.header + .header h4,
.header + .header h5 {
margin-top: 1em;
}
h1 a.header:target::before,
h2 a.header:target::before,
h3 a.header:target::before,
h4 a.header:target::before {
display: inline-block;
content: "»";
margin-left: -30px;
width: 30px;
}
h1 a.header:target,
h2 a.header:target,
h3 a.header:target,
h4 a.header:target {
scroll-margin-top: calc(var(--menu-bar-height) + 0.5em);
}
.page {
outline: 0;
padding: 0 var(--page-padding);
}
.page-wrapper {
box-sizing: border-box;
}
.js:not(.sidebar-resizing) .page-wrapper {
transition: margin-left 0.3s ease, transform 0.3s ease; /* Animation: slide away */
}
.content {
overflow-y: auto;
padding: 0 15px;
padding-bottom: 50px;
}
.content main {
margin-left: auto;
margin-right: auto;
max-width: var(--content-max-width);
}
.content a { text-decoration: none; }
.content a:hover { text-decoration: underline; }
.content img { max-width: 100%; }
.content .header:link,
.content .header:visited {
color: var(--fg);
}
.content .header:link,
.content .header:visited:hover {
text-decoration: none;
}
table {
margin: 0 auto;
border-collapse: collapse;
}
table td {
padding: 3px 20px;
border: 1px var(--table-border-color) solid;
}
table thead {
background: var(--table-header-bg);
}
table thead td {
font-weight: 700;
border: none;
}
table thead th {
padding: 3px 20px;
}
table thead tr {
border: 1px var(--table-header-bg) solid;
}
/* Alternate background colors for rows */
table tbody tr:nth-child(2n) {
background: var(--table-alternate-bg);
}
blockquote {
margin: 20px 0;
padding: 0 20px;
color: var(--fg);
background-color: var(--quote-bg);
border-top: .1em solid var(--quote-border);
border-bottom: .1em solid var(--quote-border);
}
:not(.footnote-definition) + .footnote-definition,
.footnote-definition + :not(.footnote-definition) {
margin-top: 2em;
}
.footnote-definition {
font-size: 0.9em;
margin: 0.5em 0;
}
.footnote-definition p {
display: inline;
}
.tooltiptext {
position: absolute;
visibility: hidden;
color: #fff;
background-color: #333;
transform: translateX(-50%); /* Center by moving tooltip 50% of its width left */
left: -8px; /* Half of the width of the icon */
top: -35px;
font-size: 0.8em;
text-align: center;
border-radius: 6px;
padding: 5px 8px;
margin: 5px;
z-index: 1000;
}
.tooltipped .tooltiptext {
visibility: visible;
}
kmeans_pytorch/docs/static/css/print.css 0 → 100644
View file @ 0063a668
#sidebar,
#menu-bar,
.nav-chapters,
.mobile-nav-chapters {
display: none;
}
#page-wrapper.page-wrapper {
transform: none;
margin-left: 0px;
overflow-y: initial;
}
#content {
max-width: none;
margin: 0;
padding: 0;
}
.page {
overflow-y: initial;
}
code {
background-color: #666666;
border-radius: 5px;
/* Force background to be printed in Chrome */
-webkit-print-color-adjust: exact;
}
pre > .buttons {
z-index: 2;
}
a, a:visited, a:active, a:hover {
color: #4183c4;
text-decoration: none;
}
h1, h2, h3, h4, h5, h6 {
page-break-inside: avoid;
page-break-after: avoid;
}
pre, code {
page-break-inside: avoid;
white-space: pre-wrap;
}
.fa {
display: none !important;
}
kmeans_pytorch/docs/static/css/variables.css 0 → 100644
View file @ 0063a668
/* Globals */
:root {
--sidebar-width: 300px;
--page-padding: 15px;
--content-max-width: 750px;
--menu-bar-height: 50px;
}
/* Themes */
.ayu {
--bg: hsl(210, 25%, 8%);
--fg: #c5c5c5;
--sidebar-bg: #14191f;
--sidebar-fg: #c8c9db;
--sidebar-non-existant: #5c6773;
--sidebar-active: #ffb454;
--sidebar-spacer: #2d334f;
--scrollbar: var(--sidebar-fg);
--icons: #737480;
--icons-hover: #b7b9cc;
--links: #0096cf;
--inline-code-color: #ffb454;
--theme-popup-bg: #14191f;
--theme-popup-border: #5c6773;
--theme-hover: #191f26;
--quote-bg: hsl(226, 15%, 17%);
--quote-border: hsl(226, 15%, 22%);
--table-border-color: hsl(210, 25%, 13%);
--table-header-bg: hsl(210, 25%, 28%);
--table-alternate-bg: hsl(210, 25%, 11%);
--searchbar-border-color: #848484;
--searchbar-bg: #424242;
--searchbar-fg: #fff;
--searchbar-shadow-color: #d4c89f;
--searchresults-header-fg: #666;
--searchresults-border-color: #888;
--searchresults-li-bg: #252932;
--search-mark-bg: #e3b171;
}
.coal {
--bg: hsl(200, 7%, 8%);
--fg: #98a3ad;
--sidebar-bg: #292c2f;
--sidebar-fg: #a1adb8;
--sidebar-non-existant: #505254;
--sidebar-active: #3473ad;
--sidebar-spacer: #393939;
--scrollbar: var(--sidebar-fg);
--icons: #43484d;
--icons-hover: #b3c0cc;
--links: #2b79a2;
--inline-code-color: #c5c8c6;;
--theme-popup-bg: #141617;
--theme-popup-border: #43484d;
--theme-hover: #1f2124;
--quote-bg: hsl(234, 21%, 18%);
--quote-border: hsl(234, 21%, 23%);
--table-border-color: hsl(200, 7%, 13%);
--table-header-bg: hsl(200, 7%, 28%);
--table-alternate-bg: hsl(200, 7%, 11%);
--searchbar-border-color: #aaa;
--searchbar-bg: #b7b7b7;
--searchbar-fg: #000;
--searchbar-shadow-color: #aaa;
--searchresults-header-fg: #666;
--searchresults-border-color: #98a3ad;
--searchresults-li-bg: #2b2b2f;
--search-mark-bg: #355c7d;
}
.light {
--bg: hsl(0, 0%, 100%);
--fg: #333333;
--sidebar-bg: #fafafa;
--sidebar-fg: #364149;
--sidebar-non-existant: #aaaaaa;
--sidebar-active: #008cff;
--sidebar-spacer: #f4f4f4;
--scrollbar: #cccccc;
--icons: #cccccc;
--icons-hover: #333333;
--links: #4183c4;
--inline-code-color: #6e6b5e;
--theme-popup-bg: #fafafa;
--theme-popup-border: #cccccc;
--theme-hover: #e6e6e6;
--quote-bg: hsl(197, 37%, 96%);
--quote-border: hsl(197, 37%, 91%);
--table-border-color: hsl(0, 0%, 95%);
--table-header-bg: hsl(0, 0%, 80%);
--table-alternate-bg: hsl(0, 0%, 97%);
--searchbar-border-color: #aaa;
--searchbar-bg: #fafafa;
--searchbar-fg: #000;
--searchbar-shadow-color: #aaa;
--searchresults-header-fg: #666;
--searchresults-border-color: #888;
--searchresults-li-bg: #e4f2fe;
--search-mark-bg: #a2cff5;
}
.navy {
--bg: hsl(226, 23%, 11%);
--fg: #bcbdd0;
--sidebar-bg: #282d3f;
--sidebar-fg: #c8c9db;
--sidebar-non-existant: #505274;
--sidebar-active: #2b79a2;
--sidebar-spacer: #2d334f;
--scrollbar: var(--sidebar-fg);
--icons: #737480;
--icons-hover: #b7b9cc;
--links: #2b79a2;
--inline-code-color: #c5c8c6;;
--theme-popup-bg: #161923;
--theme-popup-border: #737480;
--theme-hover: #282e40;
--quote-bg: hsl(226, 15%, 17%);
--quote-border: hsl(226, 15%, 22%);
--table-border-color: hsl(226, 23%, 16%);
--table-header-bg: hsl(226, 23%, 31%);
--table-alternate-bg: hsl(226, 23%, 14%);
--searchbar-border-color: #aaa;
--searchbar-bg: #aeaec6;
--searchbar-fg: #000;
--searchbar-shadow-color: #aaa;
--searchresults-header-fg: #5f5f71;
--searchresults-border-color: #5c5c68;
--searchresults-li-bg: #242430;
--search-mark-bg: #a2cff5;
}
.rust {
--bg: hsl(60, 9%, 87%);
--fg: #262625;
--sidebar-bg: #3b2e2a;
--sidebar-fg: #c8c9db;
--sidebar-non-existant: #505254;
--sidebar-active: #e69f67;
--sidebar-spacer: #45373a;
--scrollbar: var(--sidebar-fg);
--icons: #737480;
--icons-hover: #262625;
--links: #2b79a2;
--inline-code-color: #6e6b5e;
--theme-popup-bg: #e1e1db;
--theme-popup-border: #b38f6b;
--theme-hover: #99908a;
--quote-bg: hsl(60, 5%, 75%);
--quote-border: hsl(60, 5%, 70%);
--table-border-color: hsl(60, 9%, 82%);
--table-header-bg: #b3a497;
--table-alternate-bg: hsl(60, 9%, 84%);
--searchbar-border-color: #aaa;
--searchbar-bg: #fafafa;
--searchbar-fg: #000;
--searchbar-shadow-color: #aaa;
--searchresults-header-fg: #666;
--searchresults-border-color: #888;
--searchresults-li-bg: #dec2a2;
--search-mark-bg: #e69f67;
}
@media (prefers-color-scheme: dark) {
.light.no-js {
--bg: hsl(200, 7%, 8%);
--fg: #98a3ad;
--sidebar-bg: #292c2f;
--sidebar-fg: #a1adb8;
--sidebar-non-existant: #505254;
--sidebar-active: #3473ad;
--sidebar-spacer: #393939;
--scrollbar: var(--sidebar-fg);
--icons: #43484d;
--icons-hover: #b3c0cc;
--links: #2b79a2;
--inline-code-color: #c5c8c6;;
--theme-popup-bg: #141617;
--theme-popup-border: #43484d;
--theme-hover: #1f2124;
--quote-bg: hsl(234, 21%, 18%);
--quote-border: hsl(234, 21%, 23%);
--table-border-color: hsl(200, 7%, 13%);
--table-header-bg: hsl(200, 7%, 28%);
--table-alternate-bg: hsl(200, 7%, 11%);
--searchbar-border-color: #aaa;
--searchbar-bg: #b7b7b7;
--searchbar-fg: #000;
--searchbar-shadow-color: #aaa;
--searchresults-header-fg: #666;
--searchresults-border-color: #98a3ad;
--searchresults-li-bg: #2b2b2f;
--search-mark-bg: #355c7d;
}
}
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