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# coding=utf-8
# Copyright 2025 Mobile Perception Systems Lab at TU/e and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.

import collections.abc
import math
from collections.abc import Callable
from dataclasses import dataclass
from typing import Optional

import numpy as np
import torch
import torch.nn.functional as F
from torch import Tensor, nn

from ...activations import ACT2FN
from ...file_utils import ModelOutput, is_scipy_available, requires_backends
from ...modeling_layers import GradientCheckpointingLayer
from ...modeling_utils import ALL_ATTENTION_FUNCTIONS, PreTrainedModel
from ...processing_utils import Unpack
from ...utils import TransformersKwargs, auto_docstring, is_accelerate_available
from ...utils.generic import check_model_inputs
from .configuration_eomt import EomtConfig


if is_scipy_available():
    from scipy.optimize import linear_sum_assignment

if is_accelerate_available():
    from accelerate import PartialState
    from accelerate.utils import reduce


@dataclass
@auto_docstring(
    custom_intro="""
    Class for outputs of [`EomtForUniversalSegmentationOutput`].

    This output can be directly passed to [`~EomtImageProcessor.post_process_semantic_segmentation`] or
    [`~EomtImageProcessor.post_process_instance_segmentation`] or
    [`~EomtImageProcessor.post_process_panoptic_segmentation`] to compute final segmentation maps. Please, see
    [`~EomtImageProcessor] for details regarding usage.
    """
)
class EomtForUniversalSegmentationOutput(ModelOutput):
    r"""
    loss (`torch.Tensor`, *optional*):
        The computed loss, returned when labels are present.
    class_queries_logits (`torch.FloatTensor`):
        A tensor of shape `(batch_size, num_queries, num_labels + 1)` representing the proposed classes for each
        query. Note the `+ 1` is needed because we incorporate the null class.
    masks_queries_logits (`torch.FloatTensor`):
        A tensor of shape `(batch_size, num_queries, height, width)` representing the proposed masks for each
        query.
    last_hidden_state (`torch.FloatTensor` of shape `(batch_size, num_channels, height, width)`):
        Last hidden states (final feature map) of the last layer.
    hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
        Tuple of `torch.FloatTensor` (one for the output of the embeddings + one for the output of each stage) of
        shape `(batch_size, sequence_length, hidden_size)`. Hidden-states all layers of the model.
    attentions (`tuple(tuple(torch.FloatTensor))`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
        Tuple of `tuple(torch.FloatTensor)` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
        sequence_length)`. Self and Cross Attentions weights from transformer decoder.
    patch_offsets (`list[torch.Tensor]`, *optional*):
        list of tuples indicating the image index and start and end positions of patches for semantic segmentation.
    """

    loss: Optional[torch.FloatTensor] = None
    class_queries_logits: Optional[torch.FloatTensor] = None
    masks_queries_logits: Optional[torch.FloatTensor] = None
    last_hidden_state: Optional[torch.FloatTensor] = None
    hidden_states: Optional[tuple[torch.FloatTensor]] = None
    attentions: Optional[tuple[torch.FloatTensor]] = None
    patch_offsets: Optional[list[torch.Tensor]] = None


# Adapted from https://github.com/facebookresearch/detectron2/blob/main/projects/PointRend/point_rend/point_features.py
def sample_point(
    input_features: torch.Tensor, point_coordinates: torch.Tensor, add_dim=False, **kwargs
) -> torch.Tensor:
    """
    A wrapper around `torch.nn.functional.grid_sample` to support 3D point_coordinates tensors.

    Args:
        input_features (`torch.Tensor` of shape (batch_size, channels, height, width)):
            A tensor that contains features map on a height * width grid
        point_coordinates (`torch.Tensor` of shape (batch_size, num_points, 2) or (batch_size, grid_height, grid_width,:
        2)):
            A tensor that contains [0, 1] * [0, 1] normalized point coordinates
        add_dim (`bool`):
            boolean value to keep track of added dimension

    Returns:
        point_features (`torch.Tensor` of shape (batch_size, channels, num_points) or (batch_size, channels,
        height_grid, width_grid):
            A tensor that contains features for points in `point_coordinates`.
    """
    if point_coordinates.dim() == 3:
        add_dim = True
        point_coordinates = point_coordinates.unsqueeze(2)

    # use nn.function.grid_sample to get features for points in `point_coordinates` via bilinear interpolation
    point_features = torch.nn.functional.grid_sample(input_features, 2.0 * point_coordinates - 1.0, **kwargs)
    if add_dim:
        point_features = point_features.squeeze(3)

    return point_features


def pair_wise_dice_loss(inputs: Tensor, labels: Tensor) -> Tensor:
    """
    A pair wise version of the dice loss, see `dice_loss` for usage.

    Args:
        inputs (`torch.Tensor`):
            A tensor representing a mask
        labels (`torch.Tensor`):
            A tensor with the same shape as inputs. Stores the binary classification labels for each element in inputs
            (0 for the negative class and 1 for the positive class).

    Returns:
        `torch.Tensor`: The computed loss between each pairs.
    """
    inputs = inputs.sigmoid().flatten(1)
    numerator = 2 * torch.matmul(inputs, labels.T)
    # using broadcasting to get a [num_queries, NUM_CLASSES] matrix
    denominator = inputs.sum(-1)[:, None] + labels.sum(-1)[None, :]
    loss = 1 - (numerator + 1) / (denominator + 1)
    return loss


def pair_wise_sigmoid_cross_entropy_loss(inputs: torch.Tensor, labels: torch.Tensor) -> torch.Tensor:
    r"""
    A pair wise version of the cross entropy loss, see `sigmoid_cross_entropy_loss` for usage.

    Args:
        inputs (`torch.Tensor`):
            A tensor representing a mask.
        labels (`torch.Tensor`):
            A tensor with the same shape as inputs. Stores the binary classification labels for each element in inputs
            (0 for the negative class and 1 for the positive class).

    Returns:
        loss (`torch.Tensor`): The computed loss between each pairs.
    """

    height_and_width = inputs.shape[1]

    criterion = nn.BCEWithLogitsLoss(reduction="none")
    cross_entropy_loss_pos = criterion(inputs, torch.ones_like(inputs))
    cross_entropy_loss_neg = criterion(inputs, torch.zeros_like(inputs))

    loss_pos = torch.matmul(cross_entropy_loss_pos / height_and_width, labels.T)
    loss_neg = torch.matmul(cross_entropy_loss_neg / height_and_width, (1 - labels).T)
    loss = loss_pos + loss_neg
    return loss


# Adapted from https://github.com/facebookresearch/Eomt/blob/main/eomt/modeling/matcher.py
class EomtHungarianMatcher(nn.Module):
    """This class computes an assignment between the labels and the predictions of the network.

    For efficiency reasons, the labels don't include the no_object. Because of this, in general, there are more
    predictions than labels. In this case, we do a 1-to-1 matching of the best predictions, while the others are
    un-matched (and thus treated as non-objects).
    """

    def __init__(
        self, cost_class: float = 1.0, cost_mask: float = 1.0, cost_dice: float = 1.0, num_points: int = 12544
    ):
        """Creates the matcher

        Params:
            cost_class (`float`, *optional*, defaults to 1.0):
                Relative weight of the classification error in the matching cost.
            cost_mask (`float`, *optional*,  defaults to 1.0):
                This is the relative weight of the focal loss of the binary mask in the matching cost.
            cost_dice (`float`, *optional*, defaults to 1.0):
                This is the relative weight of the dice loss of the binary mask in the matching cost.
            num_points (`int`, *optional*, defaults to 12544):
                No. of points to sample on which the mask loss will be calculated. The same set of K points are
                uniformly sampled for all prediction and ground truth masks to construct the cost matrix for bipartite
                matching.
        """
        super().__init__()
        if cost_class == 0 and cost_mask == 0 and cost_dice == 0:
            raise ValueError("All costs can't be 0")

        self.num_points = num_points
        self.cost_class = cost_class
        self.cost_mask = cost_mask
        self.cost_dice = cost_dice

    @torch.no_grad()
    def forward(
        self,
        masks_queries_logits: torch.Tensor,
        class_queries_logits: torch.Tensor,
        mask_labels: torch.Tensor,
        class_labels: torch.Tensor,
    ) -> list[tuple[Tensor]]:
        """
        Params:
            masks_queries_logits (`torch.Tensor`):
                A tensor of dim `batch_size, num_queries, num_labels` with the classification logits.
            class_queries_logits (`torch.Tensor`):
                A tensor of dim `batch_size, num_queries, height, width` with the predicted masks.
            class_labels (`torch.Tensor`):
                A tensor of dim `num_target_boxes` (where num_target_boxes is the number of ground-truth objects in the
                target) containing the class labels.
            mask_labels (`torch.Tensor`):
                A tensor of dim `num_target_boxes, height, width` containing the target masks.

        Returns:
            matched_indices (`list[tuple[Tensor]]`): A list of size batch_size, containing tuples of (index_i, index_j)
            where:
                - index_i is the indices of the selected predictions (in order)
                - index_j is the indices of the corresponding selected labels (in order)
            For each batch element, it holds:
                len(index_i) = len(index_j) = min(num_queries, num_target_boxes).
        """
        indices: list[tuple[np.array]] = []

        # iterate through batch size
        batch_size = masks_queries_logits.shape[0]
        for i in range(batch_size):
            pred_probs = class_queries_logits[i].softmax(-1)
            pred_mask = masks_queries_logits[i]

            # Compute the classification cost. Contrary to the loss, we don't use the NLL, but approximate it in 1 - proba[target class]. The 1 is a constant that doesn't change the matching, it can be omitted.
            cost_class = -pred_probs[:, class_labels[i]]
            target_mask = mask_labels[i].to(pred_mask)
            target_mask = target_mask[:, None]
            pred_mask = pred_mask[:, None]

            # Sample ground truth and predicted masks
            point_coordinates = torch.rand(1, self.num_points, 2, device=pred_mask.device)

            target_coordinates = point_coordinates.repeat(target_mask.shape[0], 1, 1)
            target_mask = sample_point(target_mask, target_coordinates, align_corners=False).squeeze(1)

            pred_coordinates = point_coordinates.repeat(pred_mask.shape[0], 1, 1)
            pred_mask = sample_point(pred_mask, pred_coordinates, align_corners=False).squeeze(1)

            # compute the cross entropy loss between each mask pairs -> shape (num_queries, num_labels)
            cost_mask = pair_wise_sigmoid_cross_entropy_loss(pred_mask, target_mask)
            # Compute the dice loss between each mask pairs -> shape (num_queries, num_labels)
            cost_dice = pair_wise_dice_loss(pred_mask, target_mask)
            # final cost matrix
            cost_matrix = self.cost_mask * cost_mask + self.cost_class * cost_class + self.cost_dice * cost_dice
            # eliminate infinite values in cost_matrix to avoid the error ``ValueError: cost matrix is infeasible``
            cost_matrix = torch.minimum(cost_matrix, torch.tensor(1e10))
            cost_matrix = torch.maximum(cost_matrix, torch.tensor(-1e10))
            cost_matrix = torch.nan_to_num(cost_matrix, 0)
            # do the assignment using the hungarian algorithm in scipy
            assigned_indices: tuple[np.array] = linear_sum_assignment(cost_matrix.cpu())
            indices.append(assigned_indices)

        # It could be stacked in one tensor
        matched_indices = [
            (torch.as_tensor(i, dtype=torch.int64), torch.as_tensor(j, dtype=torch.int64)) for i, j in indices
        ]
        return matched_indices


def dice_loss(inputs: Tensor, labels: Tensor, num_masks: int) -> Tensor:
    r"""
    Compute the DICE loss, similar to generalized IOU for masks as follows:

    $$ \mathcal{L}_{\text{dice}(x, y) = 1 - \frac{2 * x \cap y }{x \cup y + 1}} $$

    In practice, since `labels` is a binary mask, (only 0s and 1s), dice can be computed as follow

    $$ \mathcal{L}_{\text{dice}(x, y) = 1 - \frac{2 * x * y }{x + y + 1}} $$

    Args:
        inputs (`torch.Tensor`):
            A tensor representing a mask.
        labels (`torch.Tensor`):
            A tensor with the same shape as inputs. Stores the binary classification labels for each element in inputs
            (0 for the negative class and 1 for the positive class).
        num_masks (`int`):
            The number of masks present in the current batch, used for normalization.

    Returns:
        `torch.Tensor`: The computed loss.
    """
    probs = inputs.sigmoid().flatten(1)
    numerator = 2 * (probs * labels).sum(-1)
    denominator = probs.sum(-1) + labels.sum(-1)
    loss = 1 - (numerator + 1) / (denominator + 1)
    loss = loss.sum() / num_masks
    return loss


def sigmoid_cross_entropy_loss(inputs: torch.Tensor, labels: torch.Tensor, num_masks: int) -> torch.Tensor:
    r"""
    Args:
        inputs (`torch.Tensor`):
            A float tensor of arbitrary shape.
        labels (`torch.Tensor`):
            A tensor with the same shape as inputs. Stores the binary classification labels for each element in inputs
            (0 for the negative class and 1 for the positive class).

    Returns:
        loss (`torch.Tensor`): The computed loss.
    """
    criterion = nn.BCEWithLogitsLoss(reduction="none")
    cross_entropy_loss = criterion(inputs, labels)

    loss = cross_entropy_loss.mean(1).sum() / num_masks
    return loss


# Adapted from https://github.com/facebookresearch/Eomt/blob/main/eomt/modeling/criterion.py
class EomtLoss(nn.Module):
    def __init__(self, config: EomtConfig, weight_dict: dict[str, float]):
        """
        The Eomt Loss. The loss is computed very similar to DETR. The process happens in two steps: 1) we
        compute hungarian assignment between ground truth masks and the outputs of the model 2) we supervise each pair
        of matched ground-truth / prediction (supervise class and mask)

        Args:
            config (`EomtConfig`):
                The configuration for Eomt model also containing loss calculation specific parameters.
            weight_dict (`dict[str, float]`):
                A dictionary of weights to be applied to the different losses.
        """
        super().__init__()
        requires_backends(self, ["scipy"])
        self.num_labels = config.num_labels
        self.weight_dict = weight_dict

        # Weight to apply to the null class
        self.eos_coef = config.no_object_weight
        empty_weight = torch.ones(self.num_labels + 1)
        empty_weight[-1] = self.eos_coef
        self.register_buffer("empty_weight", empty_weight)

        # pointwise mask loss parameters
        self.num_points = config.train_num_points
        self.oversample_ratio = config.oversample_ratio
        self.importance_sample_ratio = config.importance_sample_ratio

        self.matcher = EomtHungarianMatcher(
            cost_class=config.class_weight,
            cost_dice=config.dice_weight,
            cost_mask=config.mask_weight,
            num_points=self.num_points,
        )

    def _max_by_axis(self, sizes: list[list[int]]) -> list[int]:
        maxes = sizes[0]
        for sublist in sizes[1:]:
            for index, item in enumerate(sublist):
                maxes[index] = max(maxes[index], item)
        return maxes

    # Adapted from nested_tensor_from_tensor_list() in original implementation
    def _pad_images_to_max_in_batch(self, tensors: list[Tensor]) -> tuple[Tensor, Tensor]:
        # get the maximum size in the batch
        max_size = self._max_by_axis([list(tensor.shape) for tensor in tensors])
        # compute final size
        batch_shape = [len(tensors)] + max_size
        batch_size, _, height, width = batch_shape
        dtype = tensors[0].dtype
        device = tensors[0].device
        padded_tensors = torch.zeros(batch_shape, dtype=dtype, device=device)
        padding_masks = torch.ones((batch_size, height, width), dtype=torch.bool, device=device)
        # pad the tensors to the size of the biggest one
        for tensor, padded_tensor, padding_mask in zip(tensors, padded_tensors, padding_masks):
            padded_tensor[: tensor.shape[0], : tensor.shape[1], : tensor.shape[2]].copy_(tensor)
            padding_mask[: tensor.shape[1], : tensor.shape[2]] = False

        return padded_tensors, padding_masks

    def loss_labels(
        self, class_queries_logits: Tensor, class_labels: list[Tensor], indices: tuple[np.array]
    ) -> dict[str, Tensor]:
        """Compute the losses related to the labels using cross entropy.

        Args:
            class_queries_logits (`torch.Tensor`):
                A tensor of shape `batch_size, num_queries, num_labels`
            class_labels (`list[torch.Tensor]`):
                List of class labels of shape `(labels)`.
            indices (`tuple[np.array])`:
                The indices computed by the Hungarian matcher.

        Returns:
            `dict[str, Tensor]`: A dict of `torch.Tensor` containing the following key:
            - **loss_cross_entropy** -- The loss computed using cross entropy on the predicted and ground truth labels.
        """
        pred_logits = class_queries_logits
        batch_size, num_queries, _ = pred_logits.shape
        criterion = nn.CrossEntropyLoss(weight=self.empty_weight)
        idx = self._get_predictions_permutation_indices(indices)  # shape of (batch_size, num_queries)
        target_classes_o = torch.cat(
            [target[j] for target, (_, j) in zip(class_labels, indices)]
        )  # shape of (batch_size, num_queries)
        target_classes = torch.full(
            (batch_size, num_queries), fill_value=self.num_labels, dtype=torch.int64, device=pred_logits.device
        )
        target_classes[idx] = target_classes_o
        # Permute target_classes (batch_size, num_queries, num_labels) -> (batch_size, num_labels, num_queries)
        pred_logits_transposed = pred_logits.transpose(1, 2)
        loss_ce = criterion(pred_logits_transposed, target_classes)
        losses = {"loss_cross_entropy": loss_ce}
        return losses

    def loss_masks(
        self,
        masks_queries_logits: torch.Tensor,
        mask_labels: list[torch.Tensor],
        indices: tuple[np.array],
        num_masks: int,
    ) -> dict[str, torch.Tensor]:
        """Compute the losses related to the masks using sigmoid_cross_entropy_loss and dice loss.

        Args:
            masks_queries_logits (`torch.Tensor`):
                A tensor of shape `(batch_size, num_queries, height, width)`.
            mask_labels (`torch.Tensor`):
                List of mask labels of shape `(labels, height, width)`.
            indices (`tuple[np.array])`:
                The indices computed by the Hungarian matcher.
            num_masks (`int)`:
                The number of masks, used for normalization.

        Returns:
            losses (`dict[str, Tensor]`): A dict of `torch.Tensor` containing two keys:
            - **loss_mask** -- The loss computed using sigmoid cross entropy loss on the predicted and ground truth.
              masks.
            - **loss_dice** -- The loss computed using dice loss on the predicted on the predicted and ground truth,
              masks.
        """
        src_idx = self._get_predictions_permutation_indices(indices)
        tgt_idx = self._get_targets_permutation_indices(indices)
        # shape (batch_size * num_queries, height, width)
        pred_masks = masks_queries_logits[src_idx]
        # shape (batch_size, num_queries, height, width)
        # pad all and stack the targets to the num_labels dimension
        target_masks, _ = self._pad_images_to_max_in_batch(mask_labels)
        target_masks = target_masks[tgt_idx]

        # No need to upsample predictions as we are using normalized coordinates
        pred_masks = pred_masks[:, None]
        target_masks = target_masks[:, None]

        # Sample point coordinates
        with torch.no_grad():
            point_coordinates = self.sample_points_using_uncertainty(
                pred_masks,
                lambda logits: self.calculate_uncertainty(logits),
                self.num_points,
                self.oversample_ratio,
                self.importance_sample_ratio,
            )

            point_labels = sample_point(target_masks, point_coordinates, align_corners=False).squeeze(1)

        point_logits = sample_point(pred_masks, point_coordinates, align_corners=False).squeeze(1)

        losses = {
            "loss_mask": sigmoid_cross_entropy_loss(point_logits, point_labels, num_masks),
            "loss_dice": dice_loss(point_logits, point_labels, num_masks),
        }

        del pred_masks
        del target_masks
        return losses

    def _get_predictions_permutation_indices(self, indices):
        # Permute predictions following indices
        batch_indices = torch.cat([torch.full_like(src, i) for i, (src, _) in enumerate(indices)])
        predictions_indices = torch.cat([src for (src, _) in indices])
        return batch_indices, predictions_indices

    def _get_targets_permutation_indices(self, indices):
        # Permute labels following indices
        batch_indices = torch.cat([torch.full_like(tgt, i) for i, (_, tgt) in enumerate(indices)])
        target_indices = torch.cat([tgt for (_, tgt) in indices])
        return batch_indices, target_indices

    def calculate_uncertainty(self, logits: torch.Tensor) -> torch.Tensor:
        """
        In Eomt paper, uncertainty is estimated as L1 distance between 0.0 and the logit prediction in 'logits'
        for the foreground class in `classes`.

        Args:
            logits (`torch.Tensor`):
            A tensor of shape (R, 1, ...) for class-specific or class-agnostic, where R is the total number of predicted masks in all images and C is:
            the number of foreground classes. The values are logits.

        Returns:
            scores (`torch.Tensor`): A tensor of shape (R, 1, ...) that contains uncertainty scores with the most
            uncertain locations having the highest uncertainty score.
        """
        uncertainty_scores = -(torch.abs(logits))
        return uncertainty_scores

    def sample_points_using_uncertainty(
        self,
        logits: torch.Tensor,
        uncertainty_function,
        num_points: int,
        oversample_ratio: int,
        importance_sample_ratio: float,
    ) -> torch.Tensor:
        """
        This function is meant for sampling points in [0, 1] * [0, 1] coordinate space based on their uncertainty. The
        uncertainty is calculated for each point using the passed `uncertainty function` that takes points logit
        prediction as input.

        Args:
            logits (`float`):
                Logit predictions for P points.
            uncertainty_function:
                A function that takes logit predictions for P points and returns their uncertainties.
            num_points (`int`):
                The number of points P to sample.
            oversample_ratio (`int`):
                Oversampling parameter.
            importance_sample_ratio (`float`):
                Ratio of points that are sampled via importance sampling.

        Returns:
            point_coordinates (`torch.Tensor`):
                Coordinates for P sampled points.
        """

        num_boxes = logits.shape[0]
        num_points_sampled = int(num_points * oversample_ratio)

        # Get random point coordinates
        point_coordinates = torch.rand(num_boxes, num_points_sampled, 2, device=logits.device)
        # Get sampled prediction value for the point coordinates
        point_logits = sample_point(logits, point_coordinates, align_corners=False)
        # Calculate the uncertainties based on the sampled prediction values of the points
        point_uncertainties = uncertainty_function(point_logits)

        num_uncertain_points = int(importance_sample_ratio * num_points)
        num_random_points = num_points - num_uncertain_points

        idx = torch.topk(point_uncertainties[:, 0, :], k=num_uncertain_points, dim=1)[1]
        shift = num_points_sampled * torch.arange(num_boxes, dtype=torch.long, device=logits.device)
        idx += shift[:, None]
        point_coordinates = point_coordinates.view(-1, 2)[idx.view(-1), :].view(num_boxes, num_uncertain_points, 2)

        if num_random_points > 0:
            point_coordinates = torch.cat(
                [point_coordinates, torch.rand(num_boxes, num_random_points, 2, device=logits.device)],
                dim=1,
            )
        return point_coordinates

    def forward(
        self,
        masks_queries_logits: torch.Tensor,
        class_queries_logits: torch.Tensor,
        mask_labels: list[torch.Tensor],
        class_labels: list[torch.Tensor],
        auxiliary_predictions: Optional[dict[str, torch.Tensor]] = None,
    ) -> dict[str, torch.Tensor]:
        """
        This performs the loss computation.

        Args:
            masks_queries_logits (`torch.Tensor`):
                A tensor of shape `(batch_size, num_queries, height, width)`.
            class_queries_logits (`torch.Tensor`):
                A tensor of shape `(batch_size, num_queries, num_labels)`.
            mask_labels (`torch.Tensor`):
                List of mask labels of shape `(labels, height, width)`.
            class_labels (`list[torch.Tensor]`):
                List of class labels of shape `(labels)`.
            auxiliary_predictions (`dict[str, torch.Tensor]`, *optional*):
                if `use_auxiliary_loss` was set to `true` in [`EomtConfig`], then it contains the logits from
                the inner layers of the EomtMaskedAttentionDecoder.

        Returns:
            losses (`dict[str, Tensor]`): A dict of `torch.Tensor` containing three keys:
            - **loss_cross_entropy** -- The loss computed using cross entropy on the predicted and ground truth labels.
            - **loss_mask** -- The loss computed using sigmoid cross_entropy loss on the predicted and ground truth
              masks.
            - **loss_dice** -- The loss computed using dice loss on the predicted on the predicted and ground truth
              masks.
            if `use_auxiliary_loss` was set to `true` in [`EomtConfig`], the dictionary contains additional
            losses for each auxiliary predictions.
        """

        # retrieve the matching between the outputs of the last layer and the labels
        indices = self.matcher(masks_queries_logits, class_queries_logits, mask_labels, class_labels)
        # compute the average number of target masks for normalization purposes
        num_masks = self.get_num_masks(class_labels, device=class_labels[0].device)
        # get all the losses
        losses: dict[str, Tensor] = {
            **self.loss_masks(masks_queries_logits, mask_labels, indices, num_masks),
            **self.loss_labels(class_queries_logits, class_labels, indices),
        }
        # in case of auxiliary losses, we repeat this process with the output of each intermediate layer.
        if auxiliary_predictions is not None:
            for idx, aux_outputs in enumerate(auxiliary_predictions):
                masks_queries_logits = aux_outputs["masks_queries_logits"]
                class_queries_logits = aux_outputs["class_queries_logits"]
                loss_dict = self.forward(masks_queries_logits, class_queries_logits, mask_labels, class_labels)
                loss_dict = {f"{key}_{idx}": value for key, value in loss_dict.items()}
                losses.update(loss_dict)

        return losses

    def get_num_masks(self, class_labels: torch.Tensor, device: torch.device) -> torch.Tensor:
        """
        Computes the average number of target masks across the batch, for normalization purposes.
        """
        num_masks = sum(len(classes) for classes in class_labels)
        num_masks = torch.as_tensor(num_masks, dtype=torch.float, device=device)
        world_size = 1
        if is_accelerate_available():
            if PartialState._shared_state != {}:
                num_masks = reduce(num_masks)
                world_size = PartialState().num_processes

        num_masks = torch.clamp(num_masks / world_size, min=1)
        return num_masks


class EomtPatchEmbeddings(nn.Module):
    """
    This class turns `pixel_values` of shape `(batch_size, num_channels, height, width)` into the initial
    `hidden_states` (patch embeddings) of shape `(batch_size, seq_length, hidden_size)` to be consumed by a
    Transformer.
    """

    def __init__(self, config):
        super().__init__()
        image_size, patch_size = config.image_size, config.patch_size
        num_channels, hidden_size = config.num_channels, config.hidden_size

        image_size = image_size if isinstance(image_size, collections.abc.Iterable) else (image_size, image_size)
        patch_size = patch_size if isinstance(patch_size, collections.abc.Iterable) else (patch_size, patch_size)
        num_patches = (image_size[1] // patch_size[1]) * (image_size[0] // patch_size[0])
        self.image_size = image_size
        self.patch_size = patch_size
        self.num_channels = num_channels
        self.num_patches = num_patches

        self.projection = nn.Conv2d(num_channels, hidden_size, kernel_size=patch_size, stride=patch_size)

    def forward(self, pixel_values: torch.Tensor) -> torch.Tensor:
        num_channels = pixel_values.shape[1]
        if num_channels != self.num_channels:
            raise ValueError(
                "Make sure that the channel dimension of the pixel values match with the one set in the configuration."
                f" Expected {self.num_channels} but got {num_channels}."
            )
        embeddings = self.projection(pixel_values).flatten(2).transpose(1, 2)
        return embeddings


class EomtEmbeddings(nn.Module):
    """
    Construct the CLS token, mask token, position and patch embeddings.
    """

    def __init__(self, config: EomtConfig) -> None:
        super().__init__()

        self.config = config
        self.patch_size = config.patch_size

        self.cls_token = nn.Parameter(torch.randn(1, 1, config.hidden_size))
        self.register_tokens = nn.Parameter(torch.zeros(1, config.num_register_tokens, config.hidden_size))

        self.patch_embeddings = EomtPatchEmbeddings(config)
        num_patches = self.patch_embeddings.num_patches
        self.dropout = nn.Dropout(config.hidden_dropout_prob)
        self.num_prefix_tokens = 1 + config.num_register_tokens  # 1 for [CLS]
        self.position_embeddings = nn.Embedding(num_patches, config.hidden_size)
        self.register_buffer("position_ids", torch.arange(num_patches).expand((1, -1)), persistent=False)

    def forward(self, pixel_values: torch.Tensor) -> torch.Tensor:
        batch_size, _, _, _ = pixel_values.shape
        target_dtype = self.patch_embeddings.projection.weight.dtype
        embeddings = self.patch_embeddings(pixel_values.to(dtype=target_dtype))

        cls_tokens = self.cls_token.expand(batch_size, -1, -1)
        register_tokens = self.register_tokens.expand(batch_size, -1, -1)

        embeddings = embeddings + self.position_embeddings(self.position_ids)
        embeddings = torch.cat([cls_tokens, register_tokens, embeddings], dim=1)

        embeddings = self.dropout(embeddings)

        return embeddings


def eager_attention_forward(
    module: nn.Module,
    query: torch.Tensor,
    key: torch.Tensor,
    value: torch.Tensor,
    attention_mask: Optional[torch.Tensor],
    scaling: float,
    dropout: float = 0.0,
    **kwargs,
):
    attn_weights = torch.matmul(query, key.transpose(-1, -2)) * scaling
    if attention_mask is not None:
        attn_weights = attn_weights + attention_mask

    attn_weights = nn.functional.softmax(attn_weights, dim=-1, dtype=torch.float32).to(query.dtype)
    attn_weights = nn.functional.dropout(attn_weights, p=dropout, training=module.training)

    attn_output = torch.matmul(attn_weights, value)
    attn_output = attn_output.transpose(1, 2).contiguous()

    return attn_output, attn_weights


class EomtAttention(nn.Module):
    """Multi-headed attention from 'Attention Is All You Need' paper"""

    def __init__(self, config):
        super().__init__()
        self.config = config
        self.embed_dim = config.hidden_size
        self.num_heads = config.num_attention_heads
        self.head_dim = self.embed_dim // self.num_heads
        if self.head_dim * self.num_heads != self.embed_dim:
            raise ValueError(
                f"embed_dim must be divisible by num_heads (got `embed_dim`: {self.embed_dim} and `num_heads`:"
                f" {self.num_heads})."
            )
        self.scale = self.head_dim**-0.5
        self.dropout = config.attention_dropout
        self.is_causal = False

        self.k_proj = nn.Linear(self.embed_dim, self.embed_dim)
        self.v_proj = nn.Linear(self.embed_dim, self.embed_dim)
        self.q_proj = nn.Linear(self.embed_dim, self.embed_dim)
        self.out_proj = nn.Linear(self.embed_dim, self.embed_dim)

    def forward(
        self,
        hidden_states: torch.Tensor,
        attention_mask: Optional[torch.Tensor] = None,
        **kwargs,
    ) -> tuple[torch.Tensor, Optional[torch.Tensor]]:
        """Input shape: Batch x Time x Channel"""

        batch_size, seq_length, embed_dim = hidden_states.shape

        queries = self.q_proj(hidden_states)
        keys = self.k_proj(hidden_states)
        values = self.v_proj(hidden_states)

        queries = queries.view(batch_size, seq_length, self.num_heads, self.head_dim).transpose(1, 2)
        keys = keys.view(batch_size, seq_length, self.num_heads, self.head_dim).transpose(1, 2)
        values = values.view(batch_size, seq_length, self.num_heads, self.head_dim).transpose(1, 2)

        attention_interface: Callable = eager_attention_forward
        if self.config._attn_implementation != "eager":
            attention_interface = ALL_ATTENTION_FUNCTIONS[self.config._attn_implementation]

        attn_output, attn_weights = attention_interface(
            self,
            queries,
            keys,
            values,
            attention_mask,
            is_causal=self.is_causal,
            scaling=self.scale,
            dropout=0.0 if not self.training else self.dropout,
        )

        attn_output = attn_output.reshape(batch_size, seq_length, embed_dim).contiguous()
        attn_output = self.out_proj(attn_output)

        return attn_output, attn_weights


class EomtLayerScale(nn.Module):
    def __init__(self, config) -> None:
        super().__init__()
        self.lambda1 = nn.Parameter(config.layerscale_value * torch.ones(config.hidden_size))

    def forward(self, hidden_state: torch.Tensor) -> torch.Tensor:
        return hidden_state * self.lambda1


def drop_path(input: torch.Tensor, drop_prob: float = 0.0, training: bool = False) -> torch.Tensor:
    """
    Drop paths (Stochastic Depth) per sample (when applied in main path of residual blocks).

    """
    if drop_prob == 0.0 or not training:
        return input
    keep_prob = 1 - drop_prob
    shape = (input.shape[0],) + (1,) * (input.ndim - 1)  # work with diff dim tensors, not just 2D ConvNets
    random_tensor = keep_prob + torch.rand(shape, dtype=input.dtype, device=input.device)
    random_tensor.floor_()  # binarize
    output = input.div(keep_prob) * random_tensor
    return output


class EomtDropPath(nn.Module):
    """Drop paths (Stochastic Depth) per sample (when applied in main path of residual blocks)."""

    def __init__(self, drop_prob: Optional[float] = None) -> None:
        super().__init__()
        self.drop_prob = drop_prob

    def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
        return drop_path(hidden_states, self.drop_prob, self.training)

    def extra_repr(self) -> str:
        return f"p={self.drop_prob}"


class EomtMLP(nn.Module):
    def __init__(self, config) -> None:
        super().__init__()
        in_features = out_features = config.hidden_size
        hidden_features = int(config.hidden_size * config.mlp_ratio)
        self.fc1 = nn.Linear(in_features, hidden_features, bias=True)
        if isinstance(config.hidden_act, str):
            self.activation = ACT2FN[config.hidden_act]
        else:
            self.activation = config.hidden_act
        self.fc2 = nn.Linear(hidden_features, out_features, bias=True)

    def forward(self, hidden_state: torch.Tensor) -> torch.Tensor:
        hidden_state = self.fc1(hidden_state)
        hidden_state = self.activation(hidden_state)
        hidden_state = self.fc2(hidden_state)
        return hidden_state


class EomtSwiGLUFFN(nn.Module):
    def __init__(self, config) -> None:
        super().__init__()
        in_features = out_features = config.hidden_size
        hidden_features = int(config.hidden_size * config.mlp_ratio)
        hidden_features = (int(hidden_features * 2 / 3) + 7) // 8 * 8

        self.weights_in = nn.Linear(in_features, 2 * hidden_features, bias=True)
        self.weights_out = nn.Linear(hidden_features, out_features, bias=True)

    def forward(self, hidden_state: torch.Tensor) -> torch.Tensor:
        hidden_state = self.weights_in(hidden_state)
        x1, x2 = hidden_state.chunk(2, dim=-1)
        hidden = nn.functional.silu(x1) * x2
        return self.weights_out(hidden)


class EomtLayer(GradientCheckpointingLayer):
    """This corresponds to the Block class in the original implementation."""

    def __init__(self, config: EomtConfig) -> None:
        super().__init__()

        self.norm1 = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
        self.attention = EomtAttention(config)
        self.layer_scale1 = EomtLayerScale(config)
        self.drop_path = EomtDropPath(config.drop_path_rate) if config.drop_path_rate > 0.0 else nn.Identity()

        self.norm2 = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)

        if config.use_swiglu_ffn:
            self.mlp = EomtSwiGLUFFN(config)
        else:
            self.mlp = EomtMLP(config)
        self.layer_scale2 = EomtLayerScale(config)

    def forward(
        self,
        hidden_states: torch.Tensor,
        attention_mask: Optional[torch.Tensor] = None,
    ) -> torch.Tensor:
        hidden_states_norm = self.norm1(hidden_states)
        self_attention_output, _ = self.attention(hidden_states_norm, attention_mask)
        self_attention_output = self.layer_scale1(self_attention_output)

        # first residual connection
        hidden_states = self.drop_path(self_attention_output) + hidden_states

        # in Eomt, layernorm is also applied after self-attention
        layer_output = self.norm2(hidden_states)
        layer_output = self.mlp(layer_output)
        layer_output = self.layer_scale2(layer_output)

        # second residual connection
        layer_output = self.drop_path(layer_output) + hidden_states

        return layer_output


class EomtLayerNorm2d(nn.LayerNorm):
    def __init__(self, num_channels, eps=1e-6, affine=True):
        super().__init__(num_channels, eps=eps, elementwise_affine=affine)

    def forward(self, hidden_state: torch.Tensor) -> torch.Tensor:
        hidden_state = hidden_state.permute(0, 2, 3, 1)
        hidden_state = F.layer_norm(hidden_state, self.normalized_shape, self.weight, self.bias, self.eps)
        hidden_state = hidden_state.permute(0, 3, 1, 2)
        return hidden_state


class EomtScaleLayer(nn.Module):
    def __init__(self, config: EomtConfig):
        super().__init__()
        hidden_size = config.hidden_size
        self.conv1 = nn.ConvTranspose2d(hidden_size, hidden_size, kernel_size=2, stride=2)
        self.activation = ACT2FN[config.hidden_act]
        self.conv2 = nn.Conv2d(
            hidden_size,
            hidden_size,
            kernel_size=3,
            padding=1,
            groups=hidden_size,
            bias=False,
        )

        self.layernorm2d = EomtLayerNorm2d(hidden_size)

    def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
        hidden_states = self.conv1(hidden_states)
        hidden_states = self.activation(hidden_states)
        hidden_states = self.conv2(hidden_states)
        hidden_states = self.layernorm2d(hidden_states)
        return hidden_states


class EomtScaleBlock(nn.Module):
    def __init__(self, config: EomtConfig):
        super().__init__()
        self.num_blocks = config.num_upscale_blocks
        self.block = nn.ModuleList([EomtScaleLayer(config) for _ in range(self.num_blocks)])

    def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
        for block in self.block:
            hidden_states = block(hidden_states)
        return hidden_states


class EomtMaskHead(nn.Module):
    def __init__(self, config: EomtConfig):
        super().__init__()

        hidden_size = config.hidden_size
        self.fc1 = nn.Linear(hidden_size, hidden_size)
        self.fc2 = nn.Linear(hidden_size, hidden_size)
        self.fc3 = nn.Linear(hidden_size, hidden_size)
        self.activation = ACT2FN[config.hidden_act]

    def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
        hidden_states = self.activation(self.fc1(hidden_states))
        hidden_states = self.activation(self.fc2(hidden_states))
        hidden_states = self.fc3(hidden_states)
        return hidden_states


@auto_docstring
class EomtPreTrainedModel(PreTrainedModel):
    """
    An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
    models.
    """

    config: EomtConfig
    base_model_prefix = "eomt"
    main_input_name = "pixel_values"
    input_modalities = "image"
    supports_gradient_checkpointing = False
    _no_split_modules = ["EomtLayer"]
    _supports_sdpa = True
    _can_record_outputs = {
        "hidden_states": EomtLayer,
        "attentions": EomtAttention,
    }

    def _init_weights(self, module: nn.Module) -> None:
        std = self.config.initializer_range
        if isinstance(module, (nn.Linear, nn.Conv2d, nn.ConvTranspose2d)):
            nn.init.kaiming_uniform_(module.weight, a=math.sqrt(5))
            if module.bias is not None:
                fan_in, _ = nn.init._calculate_fan_in_and_fan_out(module.weight)
                bound = 1 / math.sqrt(fan_in) if fan_in > 0 else 0
                nn.init.uniform_(module.bias, -bound, bound)
        elif isinstance(module, nn.LayerNorm):
            module.weight.data.fill_(1.0)
            module.bias.data.zero_()
        elif isinstance(module, nn.Embedding):
            module.weight.data.normal_(mean=0.0, std=1)
            if module.padding_idx is not None:
                module.weight.data[module.padding_idx].zero_()
        elif isinstance(module, EomtLayerScale):
            if hasattr(module, "lambda1"):
                module.lambda1.data.fill_(self.config.layerscale_value)
        elif isinstance(module, EomtEmbeddings):
            module.cls_token.data = nn.init.trunc_normal_(
                module.cls_token.data.to(torch.float32), mean=0.0, std=std
            ).to(module.cls_token.dtype)
            module.register_tokens.data.zero_()


@auto_docstring(
    custom_intro="""
    The EoMT Model with head on top for instance/semantic/panoptic segmentation.
    """
)
class EomtForUniversalSegmentation(EomtPreTrainedModel):
    main_input_name = "pixel_values"

    def __init__(self, config: EomtConfig):
        super().__init__(config)
        self.config = config
        self.num_hidden_layers = config.num_hidden_layers
        self.embeddings = EomtEmbeddings(config)
        self.layernorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)

        self.query = nn.Embedding(config.num_queries, config.hidden_size)
        self.layers = nn.ModuleList([EomtLayer(config) for _ in range(config.num_hidden_layers)])

        self.upscale_block = EomtScaleBlock(config)
        self.mask_head = EomtMaskHead(config)

        self.class_predictor = nn.Linear(config.hidden_size, config.num_labels + 1)

        self.grid_size = (config.image_size // config.patch_size, config.image_size // config.patch_size)
        self.weight_dict: dict[str, float] = {
            "loss_cross_entropy": config.class_weight,
            "loss_mask": config.mask_weight,
            "loss_dice": config.dice_weight,
        }

        self.criterion = EomtLoss(config=config, weight_dict=self.weight_dict)

        self.register_buffer("attn_mask_probs", torch.ones(config.num_blocks))

        self.post_init()

    def get_loss_dict(
        self,
        masks_queries_logits: Tensor,
        class_queries_logits: Tensor,
        mask_labels: Tensor,
        class_labels: Tensor,
        auxiliary_predictions: dict[str, Tensor],
    ) -> dict[str, Tensor]:
        loss_dict: dict[str, Tensor] = self.criterion(
            masks_queries_logits=masks_queries_logits,
            class_queries_logits=class_queries_logits,
            mask_labels=mask_labels,
            class_labels=class_labels,
            auxiliary_predictions=auxiliary_predictions,
        )

        # weight each loss by `self.weight_dict[<LOSS_NAME>]` including auxiliary losses
        for key, weight in self.weight_dict.items():
            for loss_key, loss in loss_dict.items():
                if key in loss_key:
                    loss *= weight

        return loss_dict

    def get_loss(self, loss_dict: dict[str, Tensor]) -> Tensor:
        return sum(loss_dict.values())

    @check_model_inputs()
    @auto_docstring
    def forward(
        self,
        pixel_values: Tensor,
        mask_labels: Optional[list[Tensor]] = None,
        class_labels: Optional[list[Tensor]] = None,
        patch_offsets: Optional[list[Tensor]] = None,
        **kwargs: Unpack[TransformersKwargs],
    ) -> EomtForUniversalSegmentationOutput:
        r"""
        mask_labels (`list[torch.Tensor]`, *optional*):
            list of mask labels of shape `(num_labels, height, width)` to be fed to a model
        class_labels (`list[torch.LongTensor]`, *optional*):
            list of target class labels of shape `(num_labels, height, width)` to be fed to a model. They identify the
            labels of `mask_labels`, e.g. the label of `mask_labels[i][j]` if `class_labels[i][j]`.
        patch_offsets (`list[torch.Tensor]`, *optional*):
            list of tuples indicating the image index and start and end positions of patches for semantic segmentation.
        """

        masks_queries_logits_per_layer, class_queries_logits_per_layer = (), ()
        attention_mask = None

        if pixel_values is None:
            raise ValueError("You have to specify pixel_values")

        hidden_states = self.embeddings(pixel_values)

        for idx, layer_module in enumerate(self.layers):
            if idx == self.num_hidden_layers - self.config.num_blocks:
                query = self.query.weight[None, :, :].expand(hidden_states.shape[0], -1, -1).to(hidden_states.device)
                hidden_states = torch.cat((query, hidden_states), dim=1)

            if idx >= self.num_hidden_layers - self.config.num_blocks and (
                self.training or self.attn_mask_probs[idx - self.num_hidden_layers + self.config.num_blocks] > 0
            ):
                norm_hidden_states = self.layernorm(hidden_states)
                masks_queries_logits, class_queries_logits = self.predict(norm_hidden_states)

                masks_queries_logits_per_layer += (masks_queries_logits,)
                class_queries_logits_per_layer += (class_queries_logits,)

                attention_mask = torch.ones(
                    hidden_states.shape[0],
                    hidden_states.shape[1],
                    hidden_states.shape[1],
                    device=hidden_states.device,
                    dtype=torch.bool,
                )

                interpolated_logits = F.interpolate(masks_queries_logits, size=self.grid_size, mode="bilinear")
                interpolated_logits = interpolated_logits.view(
                    interpolated_logits.size(0), interpolated_logits.size(1), -1
                )

                num_query_tokens = self.config.num_queries
                encoder_start_tokens = num_query_tokens + self.embeddings.num_prefix_tokens

                # Set attention mask for queries to focus on encoder tokens based on interpolated logits
                attention_mask[:, :num_query_tokens, encoder_start_tokens:] = interpolated_logits > 0

                # Disable attention mask for random query tokens.
                attention_mask = self._disable_attention_mask(
                    attention_mask,
                    prob=self.attn_mask_probs[idx - self.num_hidden_layers + self.config.num_blocks],
                    num_query_tokens=num_query_tokens,
                    encoder_start_tokens=encoder_start_tokens,
                    device=attention_mask.device,
                )

                # Expand attention mask to 4d mask.
                attention_mask = attention_mask[:, None, ...].expand(-1, self.config.num_attention_heads, -1, -1)
                attention_mask = attention_mask.float().masked_fill(~attention_mask, -1e9)

            hidden_states = layer_module(hidden_states, attention_mask)

        sequence_output = self.layernorm(hidden_states)

        masks_queries_logits, class_queries_logits = self.predict(sequence_output)
        masks_queries_logits_per_layer += (masks_queries_logits,)
        class_queries_logits_per_layer += (class_queries_logits,)

        loss = None
        if mask_labels is not None and class_labels is not None:
            loss = 0.0
            for masks_queries_logits, class_queries_logits in zip(
                masks_queries_logits_per_layer, class_queries_logits_per_layer
            ):
                loss_dict = self.get_loss_dict(
                    masks_queries_logits=masks_queries_logits,
                    class_queries_logits=class_queries_logits,
                    mask_labels=mask_labels,
                    class_labels=class_labels,
                    auxiliary_predictions=None,
                )
                loss += self.get_loss(loss_dict)

        return EomtForUniversalSegmentationOutput(
            loss=loss,
            masks_queries_logits=masks_queries_logits,
            class_queries_logits=class_queries_logits,
            last_hidden_state=sequence_output,
            patch_offsets=patch_offsets,
        )

    def get_input_embeddings(self):
        return self.embeddings.patch_embeddings

    def predict(self, logits: torch.Tensor):
        query_tokens = logits[:, : self.config.num_queries, :]
        class_logits = self.class_predictor(query_tokens)

        prefix_tokens = logits[:, self.config.num_queries + self.embeddings.num_prefix_tokens :, :]
        prefix_tokens = prefix_tokens.transpose(1, 2)

        prefix_tokens = prefix_tokens.reshape(prefix_tokens.shape[0], -1, *self.grid_size)

        query_tokens = self.mask_head(query_tokens)
        prefix_tokens = self.upscale_block(prefix_tokens)

        mask_logits = torch.einsum("bqc, bchw -> bqhw", query_tokens, prefix_tokens)

        return mask_logits, class_logits

    @staticmethod
    def _disable_attention_mask(attn_mask, prob, num_query_tokens, encoder_start_tokens, device):
        if prob < 1:
            # Generate random queries to disable based on the probs
            random_queries = torch.rand(attn_mask.shape[0], num_query_tokens, device=device) > prob

            # Disable attention to the query tokens, considering the prefix tokens
            attn_mask[:, :num_query_tokens, encoder_start_tokens:][random_queries] = 1

        return attn_mask


__all__ = ["EomtPreTrainedModel", "EomtForUniversalSegmentation"]
