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Unverified Commit b6b6daf2 authored by Yih-Dar's avatar Yih-Dar Committed by GitHub
Browse files

Refactor doctest (#30210) 



* fix

* update

* fix

* update

* fix

---------
Co-authored-by: default avatarydshieh <ydshieh@users.noreply.github.com>
parent b3595cf0
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Showing with 295 additions and 132 deletions
.github/workflows/doctest_job.yml 0 → 100644
View file @ b6b6daf2
name: Doctest job
on:
workflow_call:
inputs:
job_splits:
required: true
type: string
split_keys:
required: true
type: string
env:
HF_HOME: /mnt/cache
TRANSFORMERS_IS_CI: yes
RUN_SLOW: yes
OMP_NUM_THREADS: 16
MKL_NUM_THREADS: 16
SIGOPT_API_TOKEN: ${{ secrets.SIGOPT_API_TOKEN }}
TF_FORCE_GPU_ALLOW_GROWTH: true
jobs:
run_doctests:
name: " "
strategy:
fail-fast: false
matrix:
split_keys: ${{ fromJson(inputs.split_keys) }}
runs-on: [single-gpu, nvidia-gpu, t4, ci]
container:
image: huggingface/transformers-all-latest-gpu
options: --gpus 0 --shm-size "16gb" --ipc host -v /mnt/cache/.cache/huggingface:/mnt/cache/
steps:
- name: Update clone
working-directory: /transformers
run: git fetch && git checkout ${{ github.sha }}
- name: Reinstall transformers in edit mode (remove the one installed during docker image build)
working-directory: /transformers
run: python3 -m pip uninstall -y transformers && python3 -m pip install -e .[flax]
- name: GPU visibility
working-directory: /transformers
run: |
python3 utils/print_env.py
- name: Show installed libraries and their versions
run: pip freeze
- name: Get doctest files
working-directory: /transformers
run: |
echo "${{ toJson(fromJson(inputs.job_splits)[matrix.split_keys]) }}" > doc_tests.txt
cat doc_tests.txt
- name: Set `split_keys`
shell: bash
run: |
echo "${{ matrix.split_keys }}"
split_keys=${{ matrix.split_keys }}
split_keys=${split_keys//'/'/'_'}
echo "split_keys"
echo "split_keys=$split_keys" >> $GITHUB_ENV
- name: Run doctests
working-directory: /transformers
run: |
cat doc_tests.txt
python3 -m pytest -v --make-reports doc_tests_gpu_${{ env.split_keys }} --doctest-modules $(cat doc_tests.txt) -sv --doctest-continue-on-failure --doctest-glob="*.md"
- name: Failure short reports
if: ${{ failure() }}
continue-on-error: true
run: cat /transformers/reports/doc_tests_gpu_${{ env.split_keys }}/failures_short.txt
- name: "Test suite reports artifacts: doc_tests_gpu_test_reports_${{ env.split_keys }}"
if: ${{ always() }}
uses: actions/upload-artifact@v3
with:
name: doc_tests_gpu_test_reports_${{ env.split_keys }}
path: /transformers/reports/doc_tests_gpu_${{ env.split_keys }}
.github/workflows/doctests.yml
View file @ b6b6daf2
......@@ -3,81 +3,85 @@ name: Doctests
on:
push:
branches:
- doctest*
- run_doctest*
repository_dispatch:
schedule:
- cron: "17 2 * * *"
env:
HF_HOME: /mnt/cache
TRANSFORMERS_IS_CI: yes
RUN_SLOW: yes
OMP_NUM_THREADS: 16
MKL_NUM_THREADS: 16
SIGOPT_API_TOKEN: ${{ secrets.SIGOPT_API_TOKEN }}
TF_FORCE_GPU_ALLOW_GROWTH: true
NUM_SLICES: 3
jobs:
run_doctests:
setup:
name: Setup
runs-on: [single-gpu, nvidia-gpu, t4, ci]
container:
image: huggingface/transformers-all-latest-gpu
options: --gpus 0 --shm-size "16gb" --ipc host -v /mnt/cache/.cache/huggingface:/mnt/cache/
outputs:
job_splits: ${{ steps.set-matrix.outputs.job_splits }}
split_keys: ${{ steps.set-matrix.outputs.split_keys }}
steps:
- name: uninstall transformers (installed during docker image build)
run: python3 -m pip uninstall -y transformers
- uses: actions/checkout@v3
- name: NVIDIA-SMI
- name: Update clone
working-directory: /transformers
run: |
nvidia-smi
git fetch && git checkout ${{ github.sha }}
- name: Install transformers in edit mode
run: python3 -m pip install -e .[flax]
- name: GPU visibility
run: |
python3 utils/print_env.py
- name: Reinstall transformers in edit mode (remove the one installed during docker image build)
working-directory: /transformers
run: python3 -m pip uninstall -y transformers && python3 -m pip install -e .
- name: Show installed libraries and their versions
working-directory: /transformers
run: pip freeze
- name: Get doctest files
- name: Check values for matrix
working-directory: /transformers
run: |
$(python3 -c 'from utils.tests_fetcher import get_all_doctest_files; to_test = get_all_doctest_files(); to_test = " ".join(to_test); fp = open("doc_tests.txt", "w"); fp.write(to_test); fp.close()')
python3 utils/split_doctest_jobs.py
python3 utils/split_doctest_jobs.py --only_return_keys --num_splits ${{ env.NUM_SLICES }}
- name: Run doctests
- id: set-matrix
working-directory: /transformers
name: Set values for matrix
run: |
python3 -m pytest -v --make-reports doc_tests_gpu --doctest-modules $(cat doc_tests.txt) -sv --doctest-continue-on-failure --doctest-glob="*.md"
- name: Failure short reports
if: ${{ failure() }}
continue-on-error: true
run: cat reports/doc_tests_gpu/failures_short.txt
echo "job_splits=$(python3 utils/split_doctest_jobs.py)" >> $GITHUB_OUTPUT
echo "split_keys=$(python3 utils/split_doctest_jobs.py --only_return_keys --num_splits ${{ env.NUM_SLICES }})" >> $GITHUB_OUTPUT
- name: Test suite reports artifacts
if: ${{ always() }}
uses: actions/upload-artifact@v3
call_doctest_job:
name: "Call doctest jobs"
needs: setup
strategy:
fail-fast: false
matrix:
split_keys: ${{ fromJson(needs.setup.outputs.split_keys) }}
uses: ./.github/workflows/doctest_job.yml
with:
name: doc_tests_gpu_test_reports
path: reports/doc_tests_gpu
job_splits: ${{ needs.setup.outputs.job_splits }}
split_keys: ${{ toJson(matrix.split_keys) }}
secrets: inherit
send_results:
name: Send results to webhook
runs-on: ubuntu-22.04
if: always()
needs: [run_doctests]
needs: [call_doctest_job]
steps:
- uses: actions/checkout@v3
- uses: actions/download-artifact@v3
- name: Send message to Slack
env:
CI_SLACK_BOT_TOKEN: ${{ secrets.CI_SLACK_BOT_TOKEN }}
CI_SLACK_CHANNEL_ID: ${{ secrets.CI_SLACK_CHANNEL_ID_DAILY_DOCS }}
CI_SLACK_CHANNEL_ID_DAILY: ${{ secrets.CI_SLACK_CHANNEL_ID_DAILY_DOCS }}
CI_SLACK_CHANNEL_DUMMY_TESTS: ${{ secrets.CI_SLACK_CHANNEL_DUMMY_TESTS }}
ACCESS_REPO_INFO_TOKEN: ${{ secrets.ACCESS_REPO_INFO_TOKEN }}
# Use `CI_SLACK_CHANNEL_DUMMY_TESTS` when doing experimentation
SLACK_REPORT_CHANNEL: ${{ secrets.CI_SLACK_CHANNEL_ID_DAILY_DOCS }}
run: |
pip install slack_sdk
python utils/notification_service_doc_tests.py
- name: "Upload results"
if: ${{ always() }}
uses: actions/upload-artifact@v3
with:
name: doc_test_results
path: doc_test_results
\ No newline at end of file
utils/notification_service_doc_tests.py
View file @ b6b6daf2
......@@ -12,16 +12,13 @@
# See the License for the specific language governing permissions and
# limitations under the License.
import collections
import json
import math
import os
import re
import time
from fnmatch import fnmatch
from typing import Dict, List
import requests
from get_ci_error_statistics import get_jobs
from slack_sdk import WebClient
......@@ -66,9 +63,8 @@ class Message:
def __init__(self, title: str, doc_test_results: Dict):
self.title = title
self._time_spent = doc_test_results["time_spent"].split(",")[0]
self.n_success = doc_test_results["success"]
self.n_failures = doc_test_results["failures"]
self.n_success = sum(job_result["n_success"] for job_result in doc_test_results.values())
self.n_failures = sum(job_result["n_failures"] for job_result in doc_test_results.values())
self.n_tests = self.n_success + self.n_failures
# Failures and success of the modeling tests
......@@ -76,7 +72,8 @@ class Message:
@property
def time(self) -> str:
time_spent = [self._time_spent]
all_results = [*self.doc_test_results.values()]
time_spent = [r["time_spent"].split(", ")[0] for r in all_results if len(r["time_spent"])]
total_secs = 0
for time in time_spent:
......@@ -205,7 +202,7 @@ class Message:
print(json.dumps({"blocks": json.loads(payload)}))
client.chat_postMessage(
channel=os.environ["CI_SLACK_CHANNEL_ID_DAILY"],
channel=SLACK_REPORT_CHANNEL_ID,
text="There was an issue running the tests.",
blocks=payload,
)
......@@ -217,7 +214,7 @@ class Message:
text = f"{self.n_failures} failures out of {self.n_tests} tests," if self.n_failures else "All tests passed."
self.thread_ts = client.chat_postMessage(
channel=os.environ["CI_SLACK_CHANNEL_ID_DAILY"],
channel=SLACK_REPORT_CHANNEL_ID,
blocks=self.payload,
text=text,
)
......@@ -248,7 +245,7 @@ class Message:
}
return [
{"type": "header", "text": {"type": "plain_text", "text": title.upper(), "emoji": True}},
{"type": "header", "text": {"type": "plain_text", "text": title, "emoji": True}},
content,
{"type": "section", "text": {"type": "mrkdwn", "text": failure_text}},
]
......@@ -257,24 +254,19 @@ class Message:
if self.thread_ts is None:
raise ValueError("Can only post reply if a post has been made.")
job_link = self.doc_test_results.pop("job_link")
self.doc_test_results.pop("failures")
self.doc_test_results.pop("success")
self.doc_test_results.pop("time_spent")
sorted_dict = sorted(self.doc_test_results.items(), key=lambda t: t[0])
for job, job_result in sorted_dict:
if len(job_result["failures"]):
for job_name, job_result in sorted_dict:
if len(job_result["failures"]) > 0:
text = f"*Num failures* :{len(job_result['failed'])} \n"
failures = job_result["failures"]
blocks = self.get_reply_blocks(job, job_link, failures, text=text)
blocks = self.get_reply_blocks(job_name, job_result["job_link"], failures, text=text)
print("Sending the following reply")
print(json.dumps({"blocks": blocks}))
client.chat_postMessage(
channel=os.environ["CI_SLACK_CHANNEL_ID_DAILY"],
text=f"Results for {job}",
channel=SLACK_REPORT_CHANNEL_ID,
text=f"Results for {job_name}",
blocks=blocks,
thread_ts=self.thread_ts["ts"],
)
......@@ -282,27 +274,6 @@ class Message:
time.sleep(1)
def get_job_links():
run_id = os.environ["GITHUB_RUN_ID"]
url = f"https://api.github.com/repos/huggingface/transformers/actions/runs/{run_id}/jobs?per_page=100"
result = requests.get(url).json()
jobs = {}
try:
jobs.update({job["name"]: job["html_url"] for job in result["jobs"]})
pages_to_iterate_over = math.ceil((result["total_count"] - 100) / 100)
for i in range(pages_to_iterate_over):
result = requests.get(url + f"&page={i + 2}").json()
jobs.update({job["name"]: job["html_url"] for job in result["jobs"]})
return jobs
except Exception as e:
print("Unknown error, could not fetch links.", e)
return {}
def retrieve_artifact(name: str):
_artifact = {}
......@@ -344,37 +315,50 @@ def retrieve_available_artifacts():
if __name__ == "__main__":
github_actions_job_links = get_job_links()
available_artifacts = retrieve_available_artifacts()
SLACK_REPORT_CHANNEL_ID = os.environ["SLACK_REPORT_CHANNEL"]
docs = collections.OrderedDict(
[
("*.py", "API Examples"),
("*.md", "MD Examples"),
]
github_actions_jobs = get_jobs(
workflow_run_id=os.environ["GITHUB_RUN_ID"], token=os.environ["ACCESS_REPO_INFO_TOKEN"]
)
# This dict will contain all the information relative to each doc test category:
artifact_name_to_job_map = {}
for job in github_actions_jobs:
for step in job["steps"]:
if step["name"].startswith("Test suite reports artifacts: "):
artifact_name = step["name"][len("Test suite reports artifacts: ") :]
artifact_name_to_job_map[artifact_name] = job
break
available_artifacts = retrieve_available_artifacts()
doc_test_results = {}
# `artifact_key` is the artifact path
for artifact_key, artifact_obj in available_artifacts.items():
artifact_path = artifact_obj.paths[0]
if not artifact_path["path"].startswith("doc_tests_gpu_test_reports_"):
continue
# change "_" back to "/" (to show the job name as path)
job_name = artifact_path["path"].replace("doc_tests_gpu_test_reports_", "").replace("_", "/")
# This dict (for each job) will contain all the information relative to each doc test job, in particular:
# - failed: list of failed tests
# - failures: dict in the format 'test': 'error_message'
doc_test_results = {
v: {
"failed": [],
"failures": {},
}
for v in docs.values()
}
job_result = {}
doc_test_results[job_name] = job_result
# Link to the GitHub Action job
doc_test_results["job_link"] = github_actions_job_links.get("run_doctests")
job = artifact_name_to_job_map[artifact_path["path"]]
job_result["job_link"] = job["html_url"]
job_result["category"] = "Python Examples" if job_name.startswith("src/") else "MD Examples"
artifact_path = available_artifacts["doc_tests_gpu_test_reports"].paths[0]
artifact = retrieve_artifact(artifact_path["name"])
artifact = retrieve_artifact(artifact_path["path"])
if "stats" in artifact:
failed, success, time_spent = handle_test_results(artifact["stats"])
doc_test_results["failures"] = failed
doc_test_results["success"] = success
doc_test_results["time_spent"] = time_spent[1:-1] + ", "
job_result["n_failures"] = failed
job_result["n_success"] = success
job_result["time_spent"] = time_spent[1:-1] + ", "
job_result["failed"] = []
job_result["failures"] = {}
all_failures = extract_first_line_failure(artifact["failures_short"])
for line in artifact["summary_short"].split("\n"):
......@@ -387,14 +371,14 @@ if __name__ == "__main__":
else:
file_path, test = line, line
for file_regex in docs.keys():
if fnmatch(file_path, file_regex):
category = docs[file_regex]
doc_test_results[category]["failed"].append(test)
job_result["failed"].append(test)
failure = all_failures[test] if test in all_failures else "N/A"
doc_test_results[category]["failures"][test] = failure
break
job_result["failures"][test] = failure
# Save and to be uploaded as artifact
os.makedirs("doc_test_results", exist_ok=True)
with open("doc_test_results/doc_test_results.json", "w", encoding="UTF-8") as fp:
json.dump(doc_test_results, fp, ensure_ascii=False, indent=4)
message = Message("🤗 Results of the doc tests.", doc_test_results)
message.post()
......
utils/split_doctest_jobs.py 0 → 100644
View file @ b6b6daf2
# Copyright 2024 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
This script is used to get the files against which we will run doc testing.
This uses `tests_fetcher.get_all_doctest_files` then groups the test files by their directory paths.
The files in `docs/source/en/model_doc` or `docs/source/en/tasks` are **NOT** grouped together with other files in the
same directory: the objective is to run doctest against them in independent GitHub Actions jobs.
Assume we are under `transformers` root directory:
To get a map (dictionary) between directory (or file) paths and the corresponding files
```bash
python utils/split_doctest_jobs.py
```
or to get a list of lists of directory (or file) paths
```bash
python utils/split_doctest_jobs.py --only_return_keys --num_splits 4
```
(this is used to allow GitHub Actions to generate more than 256 jobs using matrix)
"""
import argparse
from collections import defaultdict
from pathlib import Path
from tests_fetcher import get_all_doctest_files
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument(
"--only_return_keys",
action="store_true",
help="if to only return the keys (which is a list of list of files' directory or file paths).",
)
parser.add_argument(
"--num_splits",
type=int,
default=1,
help="the number of splits into which the (flat) list of direcotry/file paths will be split. This has effect only if `only_return_keys` is `True`.",
)
args = parser.parse_args()
all_doctest_files = get_all_doctest_files()
raw_test_collection_map = defaultdict(list)
for file in all_doctest_files:
file_dir = "/".join(Path(file).parents[0].parts)
raw_test_collection_map[file_dir].append(file)
refined_test_collection_map = {}
for file_dir in raw_test_collection_map.keys():
if file_dir in ["docs/source/en/model_doc", "docs/source/en/tasks"]:
for file in raw_test_collection_map[file_dir]:
refined_test_collection_map[file] = file
else:
refined_test_collection_map[file_dir] = " ".join(sorted(raw_test_collection_map[file_dir]))
sorted_file_dirs = sorted(refined_test_collection_map.keys())
test_collection_map = {}
for file_dir in sorted_file_dirs:
test_collection_map[file_dir] = refined_test_collection_map[file_dir]
num_jobs = len(test_collection_map)
num_jobs_per_splits = num_jobs // args.num_splits
file_directory_splits = []
end = 0
for idx in range(args.num_splits):
start = end
end = start + num_jobs_per_splits + (1 if idx < num_jobs % args.num_splits else 0)
file_directory_splits.append(sorted_file_dirs[start:end])
if args.only_return_keys:
print(file_directory_splits)
else:
print(dict(test_collection_map))
utils/tests_fetcher.py
View file @ b6b6daf2
......@@ -502,7 +502,10 @@ def get_all_doctest_files() -> List[str]:
"""
py_files = [str(x.relative_to(PATH_TO_REPO)) for x in PATH_TO_REPO.glob("**/*.py")]
md_files = [str(x.relative_to(PATH_TO_REPO)) for x in PATH_TO_REPO.glob("**/*.md")]
test_files_to_run = py_files + md_files
# change to use "/" as path separator
test_files_to_run = ["/".join(Path(x).parts) for x in test_files_to_run]
# only include files in `src` or `docs/source/en/`
test_files_to_run = [x for x in test_files_to_run if x.startswith(("src/", "docs/source/en/"))]
......
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