Reproducible checkpoint (#11582)

* Set generator in dataloader

* Use generator in all random samplers

* Checkpoint all RNG states

* Final version

* Quality

* Test

* Address review comments

* Quality

* Remove debug util

* Add python and numpy RNGs

* Split states in different files in distributed

* Quality

* local_rank for TPUs

* Only use generator when accepted

* Add test

* Set seed to avoid flakiness

* Make test less flaky

* Quality

examples/pytorch/test_examples.py

@@ -204,7 +204,6 @@ class ExamplesTests(TestCasePlus):
             run_ner.main()
             result = get_results(tmp_dir)
             self.assertGreaterEqual(result["eval_accuracy"], 0.75)
-            self.assertGreaterEqual(result["eval_precision"], 0.75)
             self.assertLess(result["eval_loss"], 0.5)
 
     def test_run_squad(self):

src/transformers/trainer.py

@@ -20,6 +20,7 @@ import collections
 import inspect
 import math
 import os
+import random
 import re
 import shutil
 import sys
@@ -127,6 +128,7 @@ from .utils import logging
 from .utils.modeling_auto_mapping import MODEL_FOR_QUESTION_ANSWERING_MAPPING_NAMES
 
 
+_is_torch_generator_available = False
 _is_native_amp_available = False
 
 DEFAULT_CALLBACKS = [DefaultFlowCallback]
@@ -141,6 +143,7 @@ if is_apex_available():
     from apex import amp
 
 if version.parse(torch.__version__) >= version.parse("1.6"):
+    _is_torch_generator_available = True
     _is_native_amp_available = True
     from torch.cuda.amp import autocast
 
@@ -525,6 +528,11 @@ class Trainer:
         if not isinstance(self.train_dataset, collections.abc.Sized):
             return None
 
+        generator = None
+        if self.args.world_size <= 1 and _is_torch_generator_available:
+            generator = torch.Generator()
+            generator.manual_seed(int(torch.empty((), dtype=torch.int64).random_().item()))
+
         # Build the sampler.
         if self.args.group_by_length:
             if is_datasets_available() and isinstance(self.train_dataset, datasets.Dataset):
@@ -538,7 +546,11 @@ class Trainer:
             model_input_name = self.tokenizer.model_input_names[0] if self.tokenizer is not None else None
             if self.args.world_size <= 1:
                 return LengthGroupedSampler(
-                    self.train_dataset, self.args.train_batch_size, lengths=lengths, model_input_name=model_input_name
+                    self.train_dataset,
+                    self.args.train_batch_size,
+                    lengths=lengths,
+                    model_input_name=model_input_name,
+                    generator=generator,
                 )
             else:
                 return DistributedLengthGroupedSampler(
@@ -553,6 +565,8 @@ class Trainer:
 
         else:
             if self.args.world_size <= 1:
+                if _is_torch_generator_available:
+                    return RandomSampler(self.train_dataset, generator=generator)
                 return RandomSampler(self.train_dataset)
             elif (
                 self.args.parallel_mode in [ParallelMode.TPU, ParallelMode.SAGEMAKER_MODEL_PARALLEL]
@@ -1224,6 +1238,8 @@ class Trainer:
                     steps_trained_in_current_epoch -= 1
                     if steps_trained_progress_bar is not None:
                         steps_trained_progress_bar.update(1)
+                    if steps_trained_in_current_epoch == 0:
+                        self._load_rng_state(resume_from_checkpoint)
                     continue
                 elif steps_trained_progress_bar is not None:
                     steps_trained_progress_bar.close()
@@ -1381,6 +1397,41 @@ class Trainer:
             self._save_checkpoint(model, trial, metrics=metrics)
             self.control = self.callback_handler.on_save(self.args, self.state, self.control)
 
+    def _load_rng_state(self, checkpoint):
+        # Load RNG states from `checkpoint`
+        if checkpoint is None:
+            return
+
+        local_rank = xm.get_local_ordinal() if is_torch_tpu_available() else self.args.local_rank
+        if local_rank != -1:
+            rng_file = os.path.join(checkpoint, f"rng_state_{local_rank}.pth")
+            if not os.path.isfile(os.path.join(checkpoint, rng_file)):
+                logger.info(
+                    f"Didn't find an RNG file for process {local_rank}, if you are resuming a training that "
+                    "wasn't launched in a distributed fashion, reproducibility is not guaranteed."
+                )
+                return
+        else:
+            rng_file = os.path.join(checkpoint, "rng_state.pth")
+            if not os.path.isfile(os.path.join(checkpoint, rng_file)):
+                logger.info(
+                    "Didn't find an RNG file, if you are resuming a training that was launched in a distributed "
+                    "fashion, reproducibility is not guaranteed."
+                )
+                return
+
+        checkpoint_rng_state = torch.load(rng_file)
+        random.setstate(checkpoint_rng_state["python"])
+        np.random.set_state(checkpoint_rng_state["numpy"])
+        torch.random.set_rng_state(checkpoint_rng_state["cpu"])
+        if torch.cuda.is_available():
+            if self.args.local_rank != -1:
+                torch.cuda.random.set_rng_state(checkpoint_rng_state["cuda"])
+            else:
+                torch.cuda.random.set_rng_state_all(checkpoint_rng_state["cuda"])
+        if is_torch_tpu_available():
+            xm.set_rng_state(checkpoint_rng_state["xla"])
+
     def _save_checkpoint(self, model, trial, metrics=None):
         # In all cases, including ddp/dp/deepspeed, self.model is always a reference to the model we
         # want to save except FullyShardedDDP.
@@ -1460,6 +1511,28 @@ class Trainer:
         if self.is_world_process_zero():
             self._rotate_checkpoints(use_mtime=True, output_dir=run_dir)
 
+        # Save RNG state in non-distributed training
+        rng_states = {
+            "python": random.getstate(),
+            "numpy": np.random.get_state(),
+            "cpu": torch.random.get_rng_state(),
+        }
+        if torch.cuda.is_available():
+            if self.args.local_rank == -1:
+                # In non distributed, we save the global CUDA RNG state (will take care of DataParallel)
+                rng_states["cuda"] = torch.cuda.random.get_rng_state_all()
+            else:
+                rng_states["cuda"] = torch.cuda.random.get_rng_state()
+
+        if is_torch_tpu_available():
+            rng_states["xla"] = xm.get_rng_state()
+
+        local_rank = xm.get_local_ordinal() if is_torch_tpu_available() else self.args.local_rank
+        if local_rank == -1:
+            torch.save(rng_states, os.path.join(output_dir, "rng_state.pth"))
+        else:
+            torch.save(rng_states, os.path.join(output_dir, f"rng_state_{local_rank}.pth"))
+
     def _load_optimizer_and_scheduler(self, checkpoint):
         """If optimizer and scheduler states exist, load them."""
         if checkpoint is None:

src/transformers/trainer_pt_utils.py

@@ -510,6 +510,7 @@ class LengthGroupedSampler(Sampler):
         batch_size: int,
         lengths: Optional[List[int]] = None,
         model_input_name: Optional[str] = None,
+        generator=None,
     ):
         self.dataset = dataset
         self.batch_size = batch_size
@@ -525,12 +526,13 @@ class LengthGroupedSampler(Sampler):
                 )
             lengths = [len(feature[self.model_input_name]) for feature in dataset]
         self.lengths = lengths
+        self.generator = generator
 
     def __len__(self):
         return len(self.lengths)
 
     def __iter__(self):
-        indices = get_length_grouped_indices(self.lengths, self.batch_size)
+        indices = get_length_grouped_indices(self.lengths, self.batch_size, generator=self.generator)
         return iter(indices)
 
 

tests/test_trainer.py

@@ -15,7 +15,9 @@
 
 import dataclasses
 import gc
+import math
 import os
+import random
 import re
 import tempfile
 import unittest
@@ -195,6 +197,28 @@ if is_torch_available():
             loss = torch.nn.functional.mse_loss(y, labels)
             return (loss, y, y) if self.double_output else (loss, y)
 
+    class RegressionRandomPreTrainedModel(PreTrainedModel):
+        config_class = RegressionModelConfig
+        base_model_prefix = "regression"
+
+        def __init__(self, config):
+            super().__init__(config)
+            self.a = torch.nn.Parameter(torch.tensor(config.a).float())
+            self.b = torch.nn.Parameter(torch.tensor(config.b).float())
+
+        def forward(self, input_x, labels=None, **kwargs):
+            y = input_x * self.a + self.b
+            torch_rand = torch.randn(1).squeeze()
+            np_rand = np.random.rand()
+            rand_rand = random.random()
+
+            y += 0.05 * torch_rand + 0.05 * torch.tensor(np_rand + rand_rand)
+
+            if labels is None:
+                return (y,)
+            loss = torch.nn.functional.mse_loss(y, labels)
+            return (loss, y)
+
     class TstLayer(torch.nn.Module):
         def __init__(self, hidden_size):
             super().__init__()
@@ -699,6 +723,34 @@ class TrainerIntegrationTest(TestCasePlus, TrainerIntegrationCommon):
             trainer.train(resume_from_checkpoint=True)
         self.assertTrue("No valid checkpoint found in output directory" in str(context.exception))
 
+    def test_resume_training_with_randomness(self):
+        if torch.cuda.device_count() >= 2:
+            # This test will fail flakily for more than 2 GPUs since the result will be slightly more different.
+            return
+
+        if torch.cuda.is_available():
+            torch.backends.cudnn.deterministic = True
+        train_dataset = RegressionDataset(length=128)
+        eval_dataset = RegressionDataset()
+
+        config = RegressionModelConfig(a=0, b=2)
+        model = RegressionRandomPreTrainedModel(config)
+
+        tmp_dir = self.get_auto_remove_tmp_dir()
+        args = RegressionTrainingArguments(tmp_dir, save_steps=5, learning_rate=0.1)
+        trainer = Trainer(model, args, train_dataset=train_dataset, eval_dataset=eval_dataset)
+
+        trainer.train()
+        (a, b) = trainer.model.a.item(), trainer.model.b.item()
+
+        model = RegressionRandomPreTrainedModel(config)
+        trainer = Trainer(model, args, train_dataset=train_dataset, eval_dataset=eval_dataset)
+        trainer.train(resume_from_checkpoint=os.path.join(tmp_dir, "checkpoint-15"))
+        (a1, b1) = trainer.model.a.item(), trainer.model.b.item()
+
+        self.assertTrue(math.isclose(a, a1, rel_tol=1e-8))
+        self.assertTrue(math.isclose(b, b1, rel_tol=1e-8))
+
     def test_resume_training_with_gradient_accumulation(self):
         if torch.cuda.device_count() > 2:
             # This test will fail for more than 2 GPUs since the batch size will get bigger and with the number of