Merge pull request #796 from stefan-it/minor-doc-updates

Minor documentation updates

docs/source/bertology.rst

@@ -15,4 +15,4 @@ In order to help this new field develop, we have included a few additional featu
 * accessing all the attention weights for each head of BERT/GPT/GPT-2,
 * retrieving heads output values and gradients to be able to compute head importance score and prune head as explained in https://arxiv.org/abs/1905.10650.
 
-To help you understand and use these features, we have added a specific example script: `bertology.py <https://github.com/huggingface/pytorch-pretrained-BERT/tree/master/examples/bertology.py>`_ while extract information and prune a model pre-trained on MRPC.
+To help you understand and use these features, we have added a specific example script: `bertology.py <https://github.com/huggingface/pytorch-transformers/blob/master/examples/run_bertology.py>`_ while extract information and prune a model pre-trained on GLUE.

docs/source/converting_tensorflow_models.rst

@@ -6,7 +6,7 @@ A command-line interface is provided to convert a TensorFlow checkpoint in a PyT
 BERT
 ^^^^
 
-You can convert any TensorFlow checkpoint for BERT (in particular `the pre-trained models released by Google <https://github.com/google-research/bert#pre-trained-models>`_\ ) in a PyTorch save file by using the `convert_tf_checkpoint_to_pytorch.py <https://github.com/huggingface/pytorch-pretrained-BERT/tree/master/pytorch_pretrained_bert/convert_tf_checkpoint_to_pytorch.py>`_ script.
+You can convert any TensorFlow checkpoint for BERT (in particular `the pre-trained models released by Google <https://github.com/google-research/bert#pre-trained-models>`_\ ) in a PyTorch save file by using the `convert_tf_checkpoint_to_pytorch.py <https://github.com/huggingface/pytorch-transformers/blob/master/pytorch_transformers/convert_tf_checkpoint_to_pytorch.py>`_ script.
 
 This CLI takes as input a TensorFlow checkpoint (three files starting with ``bert_model.ckpt``\ ) and the associated configuration file (\ ``bert_config.json``\ ), and creates a PyTorch model for this configuration, loads the weights from the TensorFlow checkpoint in the PyTorch model and saves the resulting model in a standard PyTorch save file that can be imported using ``torch.load()`` (see examples in `run_bert_extract_features.py <https://github.com/huggingface/pytorch-pretrained-BERT/tree/master/examples/run_bert_extract_features.py>`_\ , `run_bert_classifier.py <https://github.com/huggingface/pytorch-pretrained-BERT/tree/master/examples/run_bert_classifier.py>`_ and `run_bert_squad.py <https://github.com/huggingface/pytorch-pretrained-BERT/tree/master/examples/run_bert_squad.py>`_\ ).
 

docs/source/model_doc/overview.rst

@@ -90,7 +90,7 @@ where
     * ``bert_config.json`` or ``openai_gpt_config.json`` a configuration file for the model, and
     * ``pytorch_model.bin`` a PyTorch dump of a pre-trained instance of ``BertForPreTraining``\ , ``OpenAIGPTModel``\ , ``TransfoXLModel``\ , ``GPT2LMHeadModel`` (saved with the usual ``torch.save()``\ )
 
-  If ``PRE_TRAINED_MODEL_NAME_OR_PATH`` is a shortcut name, the pre-trained weights will be downloaded from AWS S3 (see the links `here <https://github.com/huggingface/pytorch-pretrained-BERT/tree/master/pytorch_pretrained_bert/modeling.py>`__\ ) and stored in a cache folder to avoid future download (the cache folder can be found at ``~/.pytorch_pretrained_bert/``\ ).
+  If ``PRE_TRAINED_MODEL_NAME_OR_PATH`` is a shortcut name, the pre-trained weights will be downloaded from AWS S3 (see the links `here <https://github.com/huggingface/pytorch-transformers/blob/master/pytorch_transformers/modeling_bert.py>`__\ ) and stored in a cache folder to avoid future download (the cache folder can be found at ``~/.pytorch_pretrained_bert/``\ ).
 
 *
   ``cache_dir`` can be an optional path to a specific directory to download and cache the pre-trained model weights. This option is useful in particular when you are using distributed training: to avoid concurrent access to the same weights you can set for example ``cache_dir='./pretrained_model_{}'.format(args.local_rank)`` (see the section on distributed training for more information).

docs/source/notebooks.rst

 Notebooks
 ================================================
 
-We include `three Jupyter Notebooks <https://github.com/huggingface/pytorch-pretrained-BERT/tree/master/notebooks>`_ that can be used to check that the predictions of the PyTorch model are identical to the predictions of the original TensorFlow model.
+We include `three Jupyter Notebooks <https://github.com/huggingface/pytorch-transformers/tree/master/notebooks>`_ that can be used to check that the predictions of the PyTorch model are identical to the predictions of the original TensorFlow model.
 
 
 *
-  The first NoteBook (\ `Comparing-TF-and-PT-models.ipynb <https://github.com/huggingface/pytorch-pretrained-BERT/tree/master/notebooks/Comparing-TF-and-PT-models.ipynb>`_\ ) extracts the hidden states of a full sequence on each layers of the TensorFlow and the PyTorch models and computes the standard deviation between them. In the given example, we get a standard deviation of 1.5e-7 to 9e-7 on the various hidden state of the models.
+  The first NoteBook (\ `Comparing-TF-and-PT-models.ipynb <https://github.com/huggingface/pytorch-transformers/blob/master/notebooks/Comparing-TF-and-PT-models.ipynb>`_\ ) extracts the hidden states of a full sequence on each layers of the TensorFlow and the PyTorch models and computes the standard deviation between them. In the given example, we get a standard deviation of 1.5e-7 to 9e-7 on the various hidden state of the models.
 
 *
-  The second NoteBook (\ `Comparing-TF-and-PT-models-SQuAD.ipynb <https://github.com/huggingface/pytorch-pretrained-BERT/tree/master/notebooks/Comparing-TF-and-PT-models-SQuAD.ipynb>`_\ ) compares the loss computed by the TensorFlow and the PyTorch models for identical initialization of the fine-tuning layer of the ``BertForQuestionAnswering`` and computes the standard deviation between them. In the given example, we get a standard deviation of 2.5e-7 between the models.
+  The second NoteBook (\ `Comparing-TF-and-PT-models-SQuAD.ipynb <https://github.com/huggingface/pytorch-transformers/blob/master/notebooks/Comparing-TF-and-PT-models-SQuAD.ipynb>`_\ ) compares the loss computed by the TensorFlow and the PyTorch models for identical initialization of the fine-tuning layer of the ``BertForQuestionAnswering`` and computes the standard deviation between them. In the given example, we get a standard deviation of 2.5e-7 between the models.
 
 *
-  The third NoteBook (\ `Comparing-TF-and-PT-models-MLM-NSP.ipynb <https://github.com/huggingface/pytorch-pretrained-BERT/tree/notebooks/Comparing-TF-and-PT-models-MLM-NSP.ipynb>`_\ ) compares the predictions computed by the TensorFlow and the PyTorch models for masked token language modeling using the pre-trained masked language modeling model.
+  The third NoteBook (\ `Comparing-TF-and-PT-models-MLM-NSP.ipynb <https://github.com/huggingface/pytorch-transformers/blob/master/notebooks/Comparing-TF-and-PT-models-MLM-NSP.ipynb>`_\ ) compares the predictions computed by the TensorFlow and the PyTorch models for masked token language modeling using the pre-trained masked language modeling model.
 
 Please follow the instructions given in the notebooks to run and modify them.