import torch import torchani import unittest import os import pickle path = os.path.dirname(os.path.realpath(__file__)) N = 97 class TestAEV(unittest.TestCase): def setUp(self): self.aev_computer = torchani.SortedAEV() self.radial_length = self.aev_computer.radial_length self.prepare = torchani.PrepareInput(self.aev_computer.species) self.aev = torch.nn.Sequential( self.prepare, self.aev_computer ) self.tolerance = 1e-5 def _test_molecule(self, coordinates, species, expected_radial, expected_angular): # compute aev using aev computer, sorted _, aev = self.aev((species, coordinates)) radial = aev[..., :self.radial_length] angular = aev[..., self.radial_length:] # manually sort expected values species = self.prepare.species_to_tensor(species, self.aev_computer.EtaR.device) _, reverse = torch.sort(species) expected_radial = expected_radial.index_select(1, reverse) expected_angular = expected_angular.index_select(1, reverse) radial_diff = expected_radial - radial radial_max_error = torch.max(torch.abs(radial_diff)).item() angular_diff = expected_angular - angular angular_max_error = torch.max(torch.abs(angular_diff)).item() self.assertLess(radial_max_error, self.tolerance) self.assertLess(angular_max_error, self.tolerance) def testGDB(self): for i in range(N): datafile = os.path.join(path, 'test_data/{}'.format(i)) with open(datafile, 'rb') as f: coordinates, species, radial, angular, _, _ = pickle.load(f) self._test_molecule(coordinates, species, radial, angular) if __name__ == '__main__': unittest.main()