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OpenDAS
torchani
Commits
c18f4a5e
Unverified
Commit
c18f4a5e
authored
Mar 19, 2020
by
Farhad Ramezanghorbani
Committed by
GitHub
Mar 19, 2020
Browse files
fix nopbc neighbor bug (#429)
parent
3fdf0251
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torchani/aev.py
torchani/aev.py
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torchani/aev.py
View file @
c18f4a5e
...
@@ -274,7 +274,7 @@ def compute_aev(species: Tensor, coordinates: Tensor, cell: Tensor,
...
@@ -274,7 +274,7 @@ def compute_aev(species: Tensor, coordinates: Tensor, cell: Tensor,
num_atoms
=
species
.
shape
[
1
]
num_atoms
=
species
.
shape
[
1
]
num_species_pairs
=
angular_length
//
angular_sublength
num_species_pairs
=
angular_length
//
angular_sublength
# PBC calculation is bypassed if there are no shifts
# PBC calculation is bypassed if there are no shifts
if
shifts
.
numel
()
==
1
:
if
shifts
.
numel
()
==
0
:
atom_index1
,
atom_index2
,
shifts
=
neighbor_pairs_nopbc
(
species
==
-
1
,
coordinates
,
cell
,
shifts
,
Rcr
)
atom_index1
,
atom_index2
,
shifts
=
neighbor_pairs_nopbc
(
species
==
-
1
,
coordinates
,
cell
,
shifts
,
Rcr
)
else
:
else
:
atom_index1
,
atom_index2
,
shifts
=
neighbor_pairs
(
species
==
-
1
,
coordinates
,
cell
,
shifts
,
Rcr
)
atom_index1
,
atom_index2
,
shifts
=
neighbor_pairs
(
species
==
-
1
,
coordinates
,
cell
,
shifts
,
Rcr
)
...
...
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