Query query Match_columns 73 No_of_seqs 55 out of 57 Neff 2.88591 Searched_HMMs 80799 Date Thu Dec 30 19:40:02 2021 Command /home/ga122/openfold/lib/conda/envs/openfold_venv/bin/hhsearch -i /tmp/tmpedq9nsbw/query.a3m -o /tmp/tmpedq9nsbw/output.hhr -maxseq 1000000 -d /data/ga122/alphafold/pdb70/pdb70 No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1HF9_B ATPASE INHIBITOR (MITOC 7.5 3.8E+02 0.0047 16.2 0.0 22 7-28 10-31 (41) 2 2CRB_A nuclear receptor bindin 6.4 4.7E+02 0.0058 18.0 0.0 20 11-30 32-51 (97) 3 4ZEY_A nuclear receptor bindin 6.3 4.7E+02 0.0059 17.3 0.0 20 11-30 26-45 (84) 4 3U8V_A Metal-binding protein s 4.1 8.1E+02 0.01 17.3 0.0 32 15-46 50-81 (93) 5 1PSM_A SPAM-H1 (RESIDUES 90 - 1.9 2.1E+03 0.026 13.4 0.0 18 11-28 14-31 (38) 6 5KC1_F Autophagy-related prote 1.5 2.7E+03 0.033 16.9 0.0 17 12-28 25-41 (226) 7 5KC1_J Autophagy-related prote 1.5 2.7E+03 0.033 16.9 0.0 17 12-28 25-41 (226) 8 3ZEE_A PARTITIONING DEFECTIVE 1.1 3.8E+03 0.046 12.5 0.0 15 58-72 30-44 (84) 9 4I6P_A Partitioning defective 1.0 4.3E+03 0.054 12.4 0.0 16 57-72 32-47 (88) 10 2Q2K_A Hypothetical protein/DN 1.0 4.3E+03 0.054 13.4 0.0 17 56-72 54-70 (70) No 1 >1HF9_B ATPASE INHIBITOR (MITOCHONDRIAL); ATPASE INHIBITOR, F1 ATPASE INHIBITOR; NMR {BOS TAURUS} SCOP: h.4.8.1 Probab=7.51 E-value=3.8e+02 Score=16.19 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=13.1 Template_Neff=4.500 Q query 7 AEHHHKAAEHHEQAAKHHHAAA 28 (73) Q Consensus 7 aEhH~kAAeHHe~AA~HH~eAA 28 (73) .++|++-++.|+.|.+-|++-. T Consensus 10 I~~He~qIk~heeaI~RHk~~i 31 (41) T 1HF9_B 10 ISHHAKEIERLQKEIERHKQSI 31 (41) T ss_dssp HHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHH Confidence 3456666666666666665543 No 2 >2CRB_A nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle; NMR {Mus musculus} SCOP: a.7.16.1 Probab=6.35 E-value=4.7e+02 Score=18.01 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=11.0 Template_Neff=5.700 Q query 11 HKAAEHHEQAAKHHHAAAEH 30 (73) Q Consensus 11 ~kAAeHHe~AA~HH~eAAkH 30 (73) ..|++-|.+|++...+|.+- T Consensus 32 ~~Aie~H~kAA~~f~~A~~~ 51 (97) T 2CRB_A 32 EEAISCHRKATTYLSEAMKL 51 (97) T ss_dssp HHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHHc Confidence 34555556666555555543 No 3 >4ZEY_A nuclear receptor binding factor 2; Structural Genomics, Joint Center for; HET: SO4, MSE; 1.5A {Homo sapiens} Probab=6.31 E-value=4.7e+02 Score=17.29 Aligned_cols=20 Identities=25% Similarity=0.200 Sum_probs=10.8 Template_Neff=6.200 Q query 11 HKAAEHHEQAAKHHHAAAEH 30 (73) Q Consensus 11 ~kAAeHHe~AA~HH~eAAkH 30 (73) ..|++-|.+|+....+|.+- T Consensus 26 ~~A~e~H~~AA~~f~~A~~~ 45 (84) T 4ZEY_A 26 EEAISCHKKAAAYLSEAMKL 45 (84) T ss_dssp HHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHHh Confidence 44555555555555555543 No 4 >3U8V_A Metal-binding protein smbP; four helical bundle, metal chaperone; 1.9A {Nitrosomonas europaea} Probab=4.11 E-value=8.1e+02 Score=17.29 Aligned_cols=32 Identities=34% Similarity=0.433 Sum_probs=15.8 Template_Neff=4.400 Q query 15 EHHEQAAKHHHAAAEHHEKGEHEQAAHHADTA 46 (73) Q Consensus 15 eHHe~AA~HH~eAAkHheaG~HekAahhAh~A 46 (73) +|-..+.++-.+|.++-..|+-+.|..++-.| T Consensus 50 ~H~~~aik~LeeAI~hgk~ghad~A~kha~~A 81 (93) T 3U8V_A 50 THVGHGIKHLEDAIKHGEEGHVGVATKHAQEA 81 (93) T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH T ss_pred hHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH Confidence 34444455555555555555555544444433 No 5 >1PSM_A SPAM-H1 (RESIDUES 90 - 127; POLYMORPHIC ANTIGEN; NMR {Plasmodium falciparum} SCOP: j.18.1.1 Probab=1.89 E-value=2.1e+03 Score=13.41 Aligned_cols=18 Identities=39% Similarity=0.433 Sum_probs=8.0 Template_Neff=1.300 Q query 11 HKAAEHHEQAAKHHHAAA 28 (73) Q Consensus 11 ~kAAeHHe~AA~HH~eAA 28 (73) .+|++--|+|++.=.+|+ T Consensus 14 e~aa~dae~a~k~ae~a~ 31 (38) T 1PSM_A 14 EQAAKDAENASKEAEEAA 31 (38) T ss_dssp HSTTTTTTHHHHHTTTTT T ss_pred HHHHHHHHHHHHHHHHHH Confidence 444444444444444443 No 6 >5KC1_F Autophagy-related protein 38; Atg38, coiled-coil, dimerization, NRBF2, autophagy; HET: NO3, NH4, EDO, NA; 2.2A {Saccharomyces cerevisiae} Probab=1.52 E-value=2.7e+03 Score=16.87 Aligned_cols=17 Identities=12% Similarity=0.040 Sum_probs=0.0 Template_Neff=5.100 Q query 12 KAAEHHEQAAKHHHAAA 28 (73) Q Consensus 12 kAAeHHe~AA~HH~eAA 28 (73) .|++-|.+|++.-.+|. T Consensus 25 eAie~h~kAAe~l~~a~ 41 (226) T 5KC1_F 25 NAKAKYQEAIEVLGPQN 41 (226) T ss_dssp ----------------- T ss_pred HHHHHHHHHHHHHHHHH Confidence 34444444444444443 No 7 >5KC1_J Autophagy-related protein 38; Atg38, coiled-coil, dimerization, NRBF2, autophagy; HET: NA, NO3, EDO, NH4; 2.2A {Saccharomyces cerevisiae} Probab=1.52 E-value=2.7e+03 Score=16.87 Aligned_cols=17 Identities=12% Similarity=0.040 Sum_probs=0.0 Template_Neff=5.100 Q query 12 KAAEHHEQAAKHHHAAA 28 (73) Q Consensus 12 kAAeHHe~AA~HH~eAA 28 (73) .|++-|.+|++.-.+|. T Consensus 25 eAie~h~kAAe~l~~a~ 41 (226) T 5KC1_J 25 NAKAKYQEAIEVLGPQN 41 (226) T ss_dssp ----------------- T ss_pred HHHHHHHHHHHHHHHHH Confidence 34444444444444443 No 8 >3ZEE_A PARTITIONING DEFECTIVE 3 HOMOLOG; CELL CYCLE; 6.1A {RATTUS NORVEGICUS} Probab=1.14 E-value=3.8e+03 Score=12.49 Aligned_cols=15 Identities=27% Similarity=0.237 Sum_probs=7.4 Template_Neff=7.600 Q query 58 AQAAKHDAEHHAPKP 72 (73) Q Consensus 58 ~eAak~ha~~H~~kp 72 (73) .+|.+.|....+.+| T Consensus 30 ~~a~~Ry~~~~~~~~ 44 (84) T 3ZEE_A 30 QQAVTRYRKAVAKDP 44 (84) T ss_dssp HHHHHHHHHHHCSSS T ss_pred HHHHHHHHHHcCCCc Confidence 455555555544433 No 9 >4I6P_A Partitioning defective 3 homolog; PB1 like motif, DUF3534, Cell; 2.9A {Rattus norvegicus} Probab=1.01 E-value=4.3e+03 Score=12.37 Aligned_cols=16 Identities=25% Similarity=0.206 Sum_probs=0.0 Template_Neff=7.500 Q query 57 AAQAAKHDAEHHAPKP 72 (73) Q Consensus 57 a~eAak~ha~~H~~kp 72 (73) +.+|.+.|....+.+| T Consensus 32 ~~~a~~Ry~~~~~~~~ 47 (88) T 4I6P_A 32 IQQAVTRYRKAVAKDP 47 (88) T ss_dssp HHHHHHHHHHHHCCCT T ss_pred HHHHHHHHHHHcCCCc No 10 >2Q2K_A Hypothetical protein/DNA Complex; protein-DNA, partition, segregation, parB, DNA; HET: EPE; 3.0A {Staphylococcus aureus} Probab=1.01 E-value=4.3e+03 Score=13.41 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=0.0 Template_Neff=1.100 Q query 56 HAAQAAKHDAEHHAPKP 72 (73) Q Consensus 56 Ha~eAak~ha~~H~~kp 72 (73) |-.||-+.|.++-|..| T Consensus 54 hireal~ryiee~g~~p 70 (70) T 2Q2K_A 54 HIREALRRYIEEIGENP 70 (70) T ss_dssp HHHHHHHHHHHHCCHHC T ss_pred HHHHHHHHHHHHHCCCC