biopython==1.79 deepspeed==0.5.3 dm-tree==0.1.6 ml-collections==0.1.0 ninja==1.10.2 tensorboardX==1.8 triton==1.0.0 git+https://github.com/PyTorchLightning/pytorch-lightning.git@6d79184ec50d9f80448013cc2c01b5b744a70b44