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Commit f4316dc0 authored by Gustaf Ahdritz's avatar Gustaf Ahdritz
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Fix AlphaFold DB download script

parent 96709588
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README.md
View file @ f4316dc0
...@@ -70,7 +70,7 @@ you want to use DeepMind's MSA generation pipeline (w/ HMMR & HHblits) or ...@@ -70,7 +70,7 @@ you want to use DeepMind's MSA generation pipeline (w/ HMMR & HHblits) or
MMseqs2 instead. For the former, run: MMseqs2 instead. For the former, run:
```bash ```bash
scripts/download_alphafold_databases.sh data/ scripts/download_alphafold_dbs.sh data/
``` ```
For the latter, run: For the latter, run:
......
scripts/download_alphafold_dbs.sh
View file @ f4316dc0
...@@ -50,6 +50,12 @@ fi ...@@ -50,6 +50,12 @@ fi
echo "Downloading MGnify..." echo "Downloading MGnify..."
bash "${SCRIPT_DIR}/download_mgnify.sh" "${DOWNLOAD_DIR}" bash "${SCRIPT_DIR}/download_mgnify.sh" "${DOWNLOAD_DIR}"
echo "Downloading PDB70..."
bash "${SCRIPT_DIR}/download_pdb70.sh" "${DOWNLOAD_DIR}"
echo "Downloading PDB mmCIF files..."
bash "${SCRIPT_DIR}/download_pdb_mmcif.sh" "${DOWNLOAD_DIR}"
echo "Downloading Uniclust30..." echo "Downloading Uniclust30..."
bash "${SCRIPT_DIR}/download_uniclust30.sh" "${DOWNLOAD_DIR}" bash "${SCRIPT_DIR}/download_uniclust30.sh" "${DOWNLOAD_DIR}"
......
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