Skip to content

GitLab

"python-wheel/examples/pipeline/frontend.py" did not exist on "03b0101e4d4013874e33f8144c9793567e762c9f"
Commit e4d7f6d2 authored by Geoffrey Yu's avatar Geoffrey Yu
Browse files

need to change ground truth load mode to train to avoid loss error

parent 08a5be86
Show whitespace changes
Inline Side-by-side
Showing with 3 additions and 4 deletions
openfold/data/data_modules.py
View file @ e4d7f6d2
......@@ -503,8 +503,7 @@ class OpenFoldSingleMultimerDataset(torch.utils.data.Dataset):
data = self._parse_mmcif(
path, mmcif_id, chain, alignment_dir, alignment_index,
)
# since it's ground truth features, change the mode to eval in order to avoid padding
ground_truth_feats = self.feature_pipeline.process_features(data, "eval",
ground_truth_feats = self.feature_pipeline.process_features(data, "train",
is_multimer=False)
#remove recycling dimension
ground_truth_feats = tensor_tree_map(lambda t: t[..., -1], ground_truth_feats)
......@@ -513,7 +512,7 @@ class OpenFoldSingleMultimerDataset(torch.utils.data.Dataset):
data = self.data_pipeline.process_core(
path, alignment_dir, alignment_index,
)
ground_truth_feats = self.feature_pipeline.process_features(data, "eval",
ground_truth_feats = self.feature_pipeline.process_features(data, "train",
is_multimer=False)
ground_truth_feats = tensor_tree_map(lambda t: t[..., -1], ground_truth_feats)
ground_truth.append(ground_truth_feats)
......@@ -527,7 +526,7 @@ class OpenFoldSingleMultimerDataset(torch.utils.data.Dataset):
alignment_index=alignment_index,
_structure_index=structure_index,
)
ground_truth_feats = self.feature_pipeline.process_features(data, "eval",
ground_truth_feats = self.feature_pipeline.process_features(data, "train",
is_multimer=False)
ground_truth_feats = tensor_tree_map(lambda t: t[..., -1], ground_truth_feats)
ground_truth.append(ground_truth_feats)
......
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment