update test files

d7162be4 · Geoffrey Yu · 4b354151 · d7162be4 · d7162be4 · d7162be4
Commit d7162be4 authored Jul 21, 2023 by Geoffrey Yu
9 changed files
--- a/tests/test_data/alignments/1hf9_A/bfd_uniclust_hits.a3m
+++ b/tests/test_data/alignments/1hf9_A/bfd_uniclust_hits.a3m
--- a/tests/test_data/alignments/1hf9_A/mgnify_hits.sto
+++ b/tests/test_data/alignments/1hf9_A/mgnify_hits.sto
+# STOCKHOLM 1.0
+
+#=GS MGYP000184479417/51-87   DE [subseq from] PL=10 UP=0 BIOMES=0000000010100
+#=GS MGYP001032527956/9-36    DE [subseq from] PL=11 UP=0 BIOMES=0000000000001
+#=GS MGYP001032527956/100-127 DE [subseq from] PL=11 UP=0 BIOMES=0000000000001
+#=GS MGYP001032527956/130-155 DE [subseq from] PL=11 UP=0 BIOMES=0000000000001
+#=GS MGYP001032527956/177-204 DE [subseq from] PL=11 UP=0 BIOMES=0000000000001
+
+query                            ALKKHHENEISHHAKEIERLQKEIERHKQSIKKLKQSEDDD
+MGYP000184479417/51-87           ALKKHHEEEIVHHKKEIERLQKEIERHKQKIKMLKHD----
+MGYP001032527956/9-36            -------SKISEMTNEISRLNSEIENYKQQIESLN------
+MGYP001032527956/100-127         -------NKINDLNNEISRLNSEIENYKQQIETLN------
+MGYP001032527956/130-155         ---------INDLTNEISRLNSEIENYKQQIETLN------
+MGYP001032527956/177-204         -------NKINDLNNEISRLNSEIDNYKQQIETLN------
+#=GC RF                          xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
+//
--- a/tests/test_data/alignments/1hf9_A/uniref90_hits.sto
+++ b/tests/test_data/alignments/1hf9_A/uniref90_hits.sto
--- a/tests/test_data/alignments/1hf9_B/bfd_uniclust_hits.a3m
+++ b/tests/test_data/alignments/1hf9_B/bfd_uniclust_hits.a3m
--- a/tests/test_data/alignments/1hf9_B/mgnify_hits.sto
+++ b/tests/test_data/alignments/1hf9_B/mgnify_hits.sto
+# STOCKHOLM 1.0
+
+#=GS MGYP000184479417/51-87   DE [subseq from] PL=10 UP=0 BIOMES=0000000010100
+#=GS MGYP001032527956/9-36    DE [subseq from] PL=11 UP=0 BIOMES=0000000000001
+#=GS MGYP001032527956/100-127 DE [subseq from] PL=11 UP=0 BIOMES=0000000000001
+#=GS MGYP001032527956/130-155 DE [subseq from] PL=11 UP=0 BIOMES=0000000000001
+#=GS MGYP001032527956/177-204 DE [subseq from] PL=11 UP=0 BIOMES=0000000000001
+
+query                            ALKKHHENEISHHAKEIERLQKEIERHKQSIKKLKQSEDDD
+MGYP000184479417/51-87           ALKKHHEEEIVHHKKEIERLQKEIERHKQKIKMLKHD----
+MGYP001032527956/9-36            -------SKISEMTNEISRLNSEIENYKQQIESLN------
+MGYP001032527956/100-127         -------NKINDLNNEISRLNSEIENYKQQIETLN------
+MGYP001032527956/130-155         ---------INDLTNEISRLNSEIENYKQQIETLN------
+MGYP001032527956/177-204         -------NKINDLNNEISRLNSEIDNYKQQIETLN------
+#=GC RF                          xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
+//
--- a/tests/test_data/alignments/1hf9_B/uniref90_hits.sto
+++ b/tests/test_data/alignments/1hf9_B/uniref90_hits.sto
--- a/tests/test_data/alignments/3zee_A/bfd_uniclust_hits.a3m
+++ b/tests/test_data/alignments/3zee_A/bfd_uniclust_hits.a3m
--- a/tests/test_data/alignments/4i6p_A/bfd_uniclust_hits.a3m
+++ b/tests/test_data/alignments/4i6p_A/bfd_uniclust_hits.a3m
--- a/tests/test_data/alignments/4i6p_B/bfd_uniclust_hits.a3m
+++ b/tests/test_data/alignments/4i6p_B/bfd_uniclust_hits.a3m