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Unverified Commit cf177c0c authored by Gustaf Ahdritz's avatar Gustaf Ahdritz Committed by GitHub
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Add note about chunking

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README.md
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...@@ -125,6 +125,10 @@ where `data` is the same directory as in the previous step. If `jackhmmer`, ...@@ -125,6 +125,10 @@ where `data` is the same directory as in the previous step. If `jackhmmer`,
If you've already computed alignments for the query, you have the option to If you've already computed alignments for the query, you have the option to
circumvent the expensive alignment computation here. circumvent the expensive alignment computation here.
Note that chunking (as defined in section 1.11.8 of the AlphaFold 2 supplement)
is enabled by default in inference mode. To disable it, set `globals.chunk_size`
to `None` in the config.
### Training ### Training
After activating the OpenFold environment with After activating the OpenFold environment with
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