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OpenDAS
OpenFold
Commits
b18026fd
Commit
b18026fd
authored
Aug 01, 2022
by
Gustaf Ahdritz
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Add CAMEO link
parent
581d64f2
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b18026fd
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@@ -289,10 +289,11 @@ python3 scripts/generate_chain_data_cache.py \
...
@@ -289,10 +289,11 @@ python3 scripts/generate_chain_data_cache.py \
where the
`cluster_file`
argument is a file of chain clusters, one cluster
where the
`cluster_file`
argument is a file of chain clusters, one cluster
per line (e.g.
[
PDB40
](
https://cdn.rcsb.org/resources/sequence/clusters/clusters-by-entity-40.txt
)
).
per line (e.g.
[
PDB40
](
https://cdn.rcsb.org/resources/sequence/clusters/clusters-by-entity-40.txt
)
).
Optionally, download an AlphaFold-style validation set from CAMEO using
Optionally, download an AlphaFold-style validation set from
`scripts/download_cameo.py`
. Use the resulting FASTA files to generate
[
CAMEO
](
https://cameo3d.org
)
using
`scripts/download_cameo.py`
. Use the
validation alignments and then specify the validation set's location
resulting FASTA files to generate validation alignments and then specify
using the
`--val_...`
family of training script flags.
the validation set's location using the
`--val_...`
family of training script
flags.
Finally, call the training script:
Finally, call the training script:
...
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