fixed problem with multimer inference

run_pretrained_openfold.py

@@ -71,7 +71,10 @@ def precompute_alignments(tags, seqs, alignment_dir, args, is_multimer):
             fp.write(f">{tag}\n{seq}")
 
         if is_multimer:
-            local_alignment_dir = alignment_dir
+            local_alignment_dir = os.path.join(
+                alignment_dir,
+                os.path.join(alignment_dir, tag),
+            )
         else:
             local_alignment_dir = os.path.join(
                 alignment_dir,
@@ -90,6 +93,7 @@ def precompute_alignments(tags, seqs, alignment_dir, args, is_multimer):
                 bfd_database_path=args.bfd_database_path,
                 uniref30_database_path=args.uniref30_database_path,
                 uniclust30_database_path=args.uniclust30_database_path,
+                uniprot_database_path=args.uniprot_database_path,
                 no_cpus=args.cpus,
             )
             alignment_runner.run(