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Commit 9a679b31 authored by Geoffrey Yu's avatar Geoffrey Yu
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fixed problem with multimer inference

parent be127915
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Showing with 5 additions and 1 deletion
run_pretrained_openfold.py
View file @ 9a679b31
...@@ -71,7 +71,10 @@ def precompute_alignments(tags, seqs, alignment_dir, args, is_multimer): ...@@ -71,7 +71,10 @@ def precompute_alignments(tags, seqs, alignment_dir, args, is_multimer):
fp.write(f">{tag}\n{seq}") fp.write(f">{tag}\n{seq}")
if is_multimer: if is_multimer:
local_alignment_dir = alignment_dir local_alignment_dir = os.path.join(
alignment_dir,
os.path.join(alignment_dir, tag),
)
else: else:
local_alignment_dir = os.path.join( local_alignment_dir = os.path.join(
alignment_dir, alignment_dir,
...@@ -90,6 +93,7 @@ def precompute_alignments(tags, seqs, alignment_dir, args, is_multimer): ...@@ -90,6 +93,7 @@ def precompute_alignments(tags, seqs, alignment_dir, args, is_multimer):
bfd_database_path=args.bfd_database_path, bfd_database_path=args.bfd_database_path,
uniref30_database_path=args.uniref30_database_path, uniref30_database_path=args.uniref30_database_path,
uniclust30_database_path=args.uniclust30_database_path, uniclust30_database_path=args.uniclust30_database_path,
uniprot_database_path=args.uniprot_database_path,
no_cpus=args.cpus, no_cpus=args.cpus,
) )
alignment_runner.run( alignment_runner.run(
......
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