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Commit 945ecc0c authored by jnwei's avatar jnwei
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minor language edits

parent d22a354b
# FAQ # FAQ
Frequently asked questions or encountered issues in OpenFold Setup and training. Frequently asked questions or encountered issues when running OpenFold.
## Setup ## Setup
- In the unit tests, I see an error such as - When running unit tests (e.g. [`./scripts/run_unit_tests.sh`](https://github.com/aqlaboratory/openfold/blob/main/scripts/run_unit_tests.sh)), I see an error such as
``` ```
ImportError: version GLIBCXX_3.4.30 not found ImportError: version GLIBCXX_3.4.30 not found
``` ```
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...@@ -145,14 +145,3 @@ If MPI is configured on your system, and you would like to use MPI to train Open ...@@ -145,14 +145,3 @@ If MPI is configured on your system, and you would like to use MPI to train Open
1. Add the `mpi4py` package, which are available through pip and conda. Please see [mpi4py documentation](https://pypi.org/project/mpi4py/) for more instructions on installation. 1. Add the `mpi4py` package, which are available through pip and conda. Please see [mpi4py documentation](https://pypi.org/project/mpi4py/) for more instructions on installation.
2. Add the `--mpi_plugin` flag to your training command. 2. Add the `--mpi_plugin` flag to your training command.
## Troubleshooting FAQ
My model training is hanging on the data loading step:
While each system is different, a few general suggestions:
Check your `$KMP_AFFINITY` environment setting
Adjust the number of data workers used to prepare data with the `--num_workers` setting. Increasing the number could help with dataset processing speed. However, to many workers could cause an OOM issue.
When I reload my pretrained model weights or checkpoints, I get `RuntimeError: Error(s) in loading state_dict for OpenFoldWrapper: Unexpected key(s) in state_dict:`
This suggests that your checkpoint / model weights are in OpenFold v1 format with outdated model layer names. Convert your weights/checkpoints following [this guide](convert_of_v1_weights.md).
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