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Commit 82e02065 authored by Gustaf Ahdritz's avatar Gustaf Ahdritz
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Fix alignment command in README

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README.md
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...@@ -188,11 +188,10 @@ the following: ...@@ -188,11 +188,10 @@ the following:
```bash ```bash
python3 scripts/precompute_alignments.py mmcif_dir/ alignment_dir/ \ python3 scripts/precompute_alignments.py mmcif_dir/ alignment_dir/ \
data/uniref90/uniref90.fasta \ --uniref90_database_path data/uniref90/uniref90.fasta \
data/mgnify/mgy_clusters_2018_12.fa \ --mgnify_database_path data/mgnify/mgy_clusters_2018_12.fa \
data/pdb70/pdb70 \ --pdb70_database_path data/pdb70/pdb70 \
data/pdb_mmcif/mmcif_files/ \ --uniclust30_database_path data/uniclust30/uniclust30_2018_08/uniclust30_2018_08 \
data/uniclust30/uniclust30_2018_08/uniclust30_2018_08 \
--bfd_database_path data/bfd/bfd_metaclust_clu_complete_id30_c90_final_seq.sorted_opt \ --bfd_database_path data/bfd/bfd_metaclust_clu_complete_id30_c90_final_seq.sorted_opt \
--cpus 16 \ --cpus 16 \
--jackhmmer_binary_path lib/conda/envs/openfold_venv/bin/jackhmmer \ --jackhmmer_binary_path lib/conda/envs/openfold_venv/bin/jackhmmer \
......
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