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Commit 70362e4b authored by Gustaf Ahdritz's avatar Gustaf Ahdritz
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Fix bugs in chain data cache script

parent 3b82ddb7
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Showing with 2 additions and 2 deletions
scripts/generate_chain_data_cache.py
View file @ 70362e4b
...@@ -11,7 +11,7 @@ sys.path.append(".") # an innocent hack to get this to run from the top level ...@@ -11,7 +11,7 @@ sys.path.append(".") # an innocent hack to get this to run from the top level
from tqdm import tqdm from tqdm import tqdm
from openfold.data.mmcif_parsing import parse from openfold.data.mmcif_parsing import parse
from openfold.np import protein from openfold.np import protein, residue_constants
def parse_file( def parse_file(
...@@ -50,7 +50,7 @@ def parse_file( ...@@ -50,7 +50,7 @@ def parse_file(
with open(os.path.join(args.data_dir, f), "r") as fp: with open(os.path.join(args.data_dir, f), "r") as fp:
pdb_string = fp.read() pdb_string = fp.read()
protein_object = protein.from_pdb_string(pdb_str, chain_id) protein_object = protein.from_pdb_string(pdb_string, None)
chain_dict = {} chain_dict = {}
chain_dict["seq"] = residue_constants.aatype_to_str_sequence( chain_dict["seq"] = residue_constants.aatype_to_str_sequence(
......
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