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OpenDAS
OpenFold
Commits
5e0616b6
Commit
5e0616b6
authored
Feb 07, 2024
by
jnwei
Committed by
Jennifer Wei
Feb 07, 2024
Browse files
edit starting sequence in notebook
parent
94a3b18e
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notebooks/OpenFold.ipynb
notebooks/OpenFold.ipynb
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notebooks/OpenFold.ipynb
View file @
5e0616b6
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@@ -49,27 +49,15 @@
},
{
"cell_type": "code",
"execution_count":
1
,
"execution_count":
null
,
"metadata": {
"id": "rowN0bVYLe9n",
"colab": {
"base_uri": "https://localhost:8080/"
},
"outputId": "8a4c9c7d-a555-460f-de39-d6aff2272d36"
"id": "rowN0bVYLe9n"
},
"outputs": [
{
"output_type": "stream",
"name": "stdout",
"text": [
"Length of input sequence : 716\n"
]
}
],
"outputs": [],
"source": [
"#@markdown ### Enter the amino acid sequence to fold ⬇️\n",
"#@markdown For multiple sequences, separate sequences with a colon `:`\n",
"input_sequence = 'M
VDATRVPMDERFRTLKKKLEEGMVFTEYEQIPKKKANGIFSTAALPENAERSRIREVVPYEENRVELIPTKENNTGYINASHIKVVVGGAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWPKLGSKHSSATYGKFKVTTKFRTDSVCYATTGLKVKHLLSGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRRHTNSMLEGTKNRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQNSRLI:MVDATRVPMDERFRTLKKKLEEGMVFTEYEQIPKKKANGIFSTAALPENAERSRIREVVPYEENRVELIPTKENNTGYINASHIKVVVGGAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWPKLGSKHSSATYGKFKVTTKFRTDSVCYATTGLKVKHLLSGQERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRRHTNSMLEGTKNRHPPIVVHCSAGVGRTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQNSRLI:GHMAEPQRHTMLCMCCKCEARIELVVESSADDLRAFQQLFLNTLSFVCPWCASQQ:GHMAEPQRHTMLCMCCKCEARIELVVESSADDLRAFQQLFLNTLSFVCPWCASQQ
' #@param {type:\"string\"}\n",
"input_sequence = 'M
KLKQVADKLEEVASKLYHNANELARVAKLLGER:MKLKQVADKLEEVASKLYHNANELARVAKLLGER: MKLKQVADKLEEVASKLYHNANELARVAKLLGER:MKLKQVADKLEEVASKLYHNANELARVAKLLGER
' #@param {type:\"string\"}\n",
"\n",
"#@markdown ### Configure the model ⬇️\n",
"\n",
...
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@@ -107,7 +95,7 @@
},
{
"cell_type": "code",
"execution_count":
2
,
"execution_count":
null
,
"metadata": {
"id": "woIxeCPygt7K"
},
...
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@@ -159,7 +147,7 @@
},
{
"cell_type": "code",
"execution_count":
3
,
"execution_count":
null
,
"metadata": {
"id": "VzJ5iMjTtoZw"
},
...
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@@ -208,7 +196,7 @@
},
{
"cell_type": "code",
"execution_count":
4
,
"execution_count":
null
,
"metadata": {
"id": "_FpxxMo-mvcP"
},
...
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@@ -914,7 +902,8 @@
"metadata": {
"colab": {
"provenance": [],
"gpuType": "T4"
"gpuType": "T4",
"toc_visible": true
},
"kernelspec": {
"display_name": "Python 3",
...
...
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