Merge remote-tracking branch 'upstream/multimer' into multimer

56d5e39c · Geoffrey Yu · 56b86074 · 51556d52 · 56d5e39c · 56d5e39c
Commit 56d5e39c authored Jun 17, 2023 by Geoffrey Yu
20 changed files
--- a/openfold/utils/geometry/vector.py
+++ b/openfold/utils/geometry/vector.py
--- a/openfold/utils/import_weights.py
+++ b/openfold/utils/import_weights.py
--- a/openfold/utils/loss.py
+++ b/openfold/utils/loss.py
--- a/openfold/utils/rigid_utils.py
+++ b/openfold/utils/rigid_utils.py
--- a/openfold/utils/script_utils.py
+++ b/openfold/utils/script_utils.py
--- a/run_pretrained_openfold.py
+++ b/run_pretrained_openfold.py
--- a/scripts/__init__.py
+++ b/scripts/__init__.py
--- a/scripts/data_dir_to_fasta.py
+++ b/scripts/data_dir_to_fasta.py
--- a/scripts/deepspeed_inference_test.py
+++ b/scripts/deepspeed_inference_test.py
--- a/scripts/download_alphafold_dbs.sh
+++ b/scripts/download_alphafold_dbs.sh
--- a/scripts/download_alphafold_params.sh
+++ b/scripts/download_alphafold_params.sh
--- a/scripts/download_mgnify.sh
+++ b/scripts/download_mgnify.sh
--- a/scripts/download_pdb_seqres.sh
+++ b/scripts/download_pdb_seqres.sh
--- a/scripts/download_uniprot.sh
+++ b/scripts/download_uniprot.sh
--- a/scripts/download_uniref30.sh
+++ b/scripts/download_uniref30.sh
--- a/scripts/flatten_roda.sh
+++ b/scripts/flatten_roda.sh
--- a/scripts/generate_alphafold_feature_dict.py
+++ b/scripts/generate_alphafold_feature_dict.py
--- a/scripts/generate_chain_data_cache.py
+++ b/scripts/generate_chain_data_cache.py
--- a/scripts/precompute_alignments.py
+++ b/scripts/precompute_alignments.py
--- a/scripts/utils.py
+++ b/scripts/utils.py