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Commit 52800ff0 authored by Gustaf Ahdritz's avatar Gustaf Ahdritz
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Add alternative fasta file extension

parent d63363b7
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scripts/precompute_alignments.py
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...@@ -51,7 +51,7 @@ def main(args): ...@@ -51,7 +51,7 @@ def main(args):
for k,v in mmcif.chain_to_seqres.items(): for k,v in mmcif.chain_to_seqres.items():
chain_id = '_'.join([file_id, k]) chain_id = '_'.join([file_id, k])
seqs[chain_id] = v seqs[chain_id] = v
elif(f.endswith('.fasta')): elif(f.endswith('.fasta') or f.endswith('.fa')):
with open(path, 'r') as fp: with open(path, 'r') as fp:
fasta_str = fp.read() fasta_str = fp.read()
input_seqs, _ = parse_fasta(fasta_str) input_seqs, _ = parse_fasta(fasta_str)
......
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