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Unverified Commit 3718d10f authored by Gustaf Ahdritz's avatar Gustaf Ahdritz Committed by GitHub
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Merge pull request #70 from ericmjl/patch-1 

Minor changes to shell commands
parents 894905b9 677a26c0
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README.md
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...@@ -61,7 +61,7 @@ To install the HH-suite to `/usr/bin`, run ...@@ -61,7 +61,7 @@ To install the HH-suite to `/usr/bin`, run
To download DeepMind's pretrained parameters and common ground truth data, run: To download DeepMind's pretrained parameters and common ground truth data, run:
```bash ```bash
scripts/download_data.sh data/ bash scripts/download_data.sh data/
``` ```
You have two choices for downloading protein databases, depending on whether You have two choices for downloading protein databases, depending on whether
...@@ -70,14 +70,14 @@ you want to use DeepMind's MSA generation pipeline (w/ HMMR & HHblits) or ...@@ -70,14 +70,14 @@ you want to use DeepMind's MSA generation pipeline (w/ HMMR & HHblits) or
MMseqs2 instead. For the former, run: MMseqs2 instead. For the former, run:
```bash ```bash
scripts/download_alphafold_dbs.sh data/ bash scripts/download_alphafold_dbs.sh data/
``` ```
For the latter, run: For the latter, run:
```bash ```bash
scripts/download_mmseqs_databases.sh data/ # downloads .tar files bash scripts/download_mmseqs_dbs.sh data/ # downloads .tar files
scripts/prep_mmseqs_databases.sh data/ # unpacks and preps the databases bash scripts/prep_mmseqs_dbs.sh data/ # unpacks and preps the databases
``` ```
Make sure to run the latter command on the machine that will be used for MSA Make sure to run the latter command on the machine that will be used for MSA
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