Unverified Commit 231eb98b authored by Gustaf Ahdritz's avatar Gustaf Ahdritz Committed by GitHub
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Update installation guide in README

parent 0067da9f
......@@ -23,12 +23,10 @@ or `bfloat16` half-precision.
## Installation (Linux)
Python dependencies available through `pip` are provided in `requirements.txt`.
OpenFold depends on `openmm==7.5.1` and `pdbfixer`, which are only available
via `conda`. For producing sequence alignments, you'll also need
`kalign`, the [HH-suite](https://github.com/soedinglab/hh-suite), and one of
{`jackhmmer`, [MMseqs2](https://github.com/soedinglab/mmseqs2) (nightly build)} installed on
on your system. Finally, some download scripts require `aria2c`.
All Python dependencies are specified in `environment.yml`. For producing sequence
alignments, you'll also need `kalign`, the [HH-suite](https://github.com/soedinglab/hh-suite),
and one of {`jackhmmer`, [MMseqs2](https://github.com/soedinglab/mmseqs2) (nightly build)}
installed on on your system. Finally, some download scripts require `aria2c`.
For convenience, we provide a script that installs Miniconda locally, creates a
`conda` virtual environment, installs all Python dependencies, and downloads
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