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Commit 200d9517 authored by Gustaf Ahdritz's avatar Gustaf Ahdritz
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Speed up dataset filtering

parent d96f27b1
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openfold/data/data_modules.py
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...@@ -107,7 +107,7 @@ class OpenFoldSingleDataset(torch.utils.data.Dataset): ...@@ -107,7 +107,7 @@ class OpenFoldSingleDataset(torch.utils.data.Dataset):
if(filter_path is not None): if(filter_path is not None):
with open(filter_path, "r") as f: with open(filter_path, "r") as f:
chains_to_include = [l.strip() for l in f.readlines()] chains_to_include = set([l.strip() for l in f.readlines()])
self._chain_ids = [c for c in self._chain_ids if c in chains_to_include] self._chain_ids = [c for c in self._chain_ids if c in chains_to_include]
......
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