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OpenDAS
OpenFold
Commits
19bce219
Commit
19bce219
authored
Aug 12, 2022
by
Tim O'Donnell
Browse files
Unzip uniref30_2103.tar.gz after download
Also fix a typo in the README
parent
5e2c3058
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README.md
README.md
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scripts/download_uniref30.sh
scripts/download_uniref30.sh
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README.md
View file @
19bce219
...
...
@@ -141,8 +141,8 @@ python3 run_pretrained_openfold.py \
--jackhmmer_binary_path
lib/conda/envs/openfold_venv/bin/jackhmmer
\
--hhblits_binary_path
lib/conda/envs/openfold_venv/bin/hhblits
\
--hhsearch_binary_path
lib/conda/envs/openfold_venv/bin/hhsearch
\
--kalign_binary_path
lib/conda/envs/openfold_venv/bin/kalign
--config_preset
"model_1_ptm"
--kalign_binary_path
lib/conda/envs/openfold_venv/bin/kalign
\
--config_preset
"model_1_ptm"
\
--openfold_checkpoint_path
openfold/resources/openfold_params/finetuning_ptm_2.pt
```
...
...
scripts/download_uniref30.sh
View file @
19bce219
...
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@@ -36,3 +36,4 @@ BASENAME=$(basename "${SOURCE_URL}")
mkdir
--parents
"
${
ROOT_DIR
}
"
aria2c
"
${
SOURCE_URL
}
"
--dir
=
"
${
ROOT_DIR
}
"
-x
4
--check-certificate
=
false
gunzip
"
${
ROOT_DIR
}
/
${
BASENAME
}
"
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