suporting newer numpy

openfold/data/data_pipeline.py

@@ -110,12 +110,12 @@ def make_sequence_features(
     )
     features["between_segment_residues"] = np.zeros((num_res,), dtype=np.int32)
     features["domain_name"] = np.array(
-        [description.encode("utf-8")], dtype=np.object_
+        [description.encode("utf-8")], dtype=object
     )
     features["residue_index"] = np.array(range(num_res), dtype=np.int32)
     features["seq_length"] = np.array([num_res] * num_res, dtype=np.int32)
     features["sequence"] = np.array(
-        [sequence.encode("utf-8")], dtype=np.object_
+        [sequence.encode("utf-8")], dtype=object
     )
     return features
 
@@ -148,7 +148,7 @@ def make_mmcif_features(
     )
 
     mmcif_feats["release_date"] = np.array(
-        [mmcif_object.header["release_date"].encode("utf-8")], dtype=np.object_
+        [mmcif_object.header["release_date"].encode("utf-8")], dtype=object
     )
 
     mmcif_feats["is_distillation"] = np.array(0., dtype=np.float32)

openfold/data/templates.py

@@ -83,8 +83,8 @@ TEMPLATE_FEATURES = {
     "template_aatype": np.int64,
     "template_all_atom_mask": np.float32,
     "template_all_atom_positions": np.float32,
-    "template_domain_names": np.object,
-    "template_sequence": np.object,
+    "template_domain_names": object,
+    "template_sequence": object,
     "template_sum_probs": np.float32,
 }