Merge branch 'main' of https://github.com/aqlaboratory/openfold

13f8f163 · zhuwenwen · a509a4c5 · b5fa2ba3 · 13f8f163 · 13f8f163
Commit 13f8f163 authored Apr 26, 2023 by zhuwenwen
20 changed files
--- a/openfold/utils/validation_metrics.py
+++ b/openfold/utils/validation_metrics.py
--- a/run_pretrained_openfold.py
+++ b/run_pretrained_openfold.py
--- a/scripts/activate_conda_env.sh
+++ b/scripts/activate_conda_env.sh
--- a/scripts/alignment_db_scripts/create_alignment_db.py
+++ b/scripts/alignment_db_scripts/create_alignment_db.py
--- a/scripts/alignment_db_scripts/unify_alignment_db_indices.py
+++ b/scripts/alignment_db_scripts/unify_alignment_db_indices.py
--- a/scripts/build_deepspeed_config.py
+++ b/scripts/build_deepspeed_config.py
--- a/scripts/colabfold_search.sh
+++ b/scripts/colabfold_search.sh
--- a/scripts/convert_of_weights_to_jax.py
+++ b/scripts/convert_of_weights_to_jax.py
--- a/scripts/data_dir_to_fasta.py
+++ b/scripts/data_dir_to_fasta.py
--- a/scripts/deactivate_conda_env.sh
+++ b/scripts/deactivate_conda_env.sh
--- a/scripts/download_alphafold_dbs.sh
+++ b/scripts/download_alphafold_dbs.sh
--- a/scripts/download_alphafold_params.sh
+++ b/scripts/download_alphafold_params.sh
--- a/scripts/download_bfd.sh
+++ b/scripts/download_bfd.sh
--- a/scripts/download_cameo.py
+++ b/scripts/download_cameo.py
--- a/scripts/download_colabfold_envdb.sh
+++ b/scripts/download_colabfold_envdb.sh
--- a/scripts/download_mgnify.sh
+++ b/scripts/download_mgnify.sh
--- a/scripts/download_mmseqs_dbs.sh
+++ b/scripts/download_mmseqs_dbs.sh
--- a/scripts/download_openfold_params.sh
+++ b/scripts/download_openfold_params.sh
--- a/scripts/download_openfold_params_gdrive.sh
+++ b/scripts/download_openfold_params_gdrive.sh
--- a/scripts/download_openfold_params_huggingface.sh
+++ b/scripts/download_openfold_params_huggingface.sh