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Commit 0fb5b743 authored by Gustaf Ahdritz's avatar Gustaf Ahdritz
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Tweak README formatting

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README.md
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...@@ -89,9 +89,11 @@ where `data` is the same directory as in the previous step. If `jackhmmer`, `hhb ...@@ -89,9 +89,11 @@ where `data` is the same directory as in the previous step. If `jackhmmer`, `hhb
### Training ### Training
After activating the OpenFold environment with `source scripts/activate_conda_env.sh`, install OpenFold by running After activating the OpenFold environment with `source scripts/activate_conda_env.sh`, install OpenFold by running
```bash ```bash
python setup.py install python setup.py install
``` ```
To train the model, you will first need to precompute protein alignments. Create `mmcif_dir/` and download `.cif` files from the PDB (e.g., `wget https://files.rcsb.org/download/4DSN.cif`). Then run: To train the model, you will first need to precompute protein alignments. Create `mmcif_dir/` and download `.cif` files from the PDB (e.g., `wget https://files.rcsb.org/download/4DSN.cif`). Then run:
```bash ```bash
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