Merge branch 'megatron-lm_dtk24.04' into 'main'

Megatron lm dtk24.04

See merge request OpenDAS/megatron-lm!1

tests/pipeline_parallel/test_schedules.py → tests/unit_tests/pipeline_parallel/test_schedules.py

 import torch
-from tests.test_utilities import Utils
+from tests.unit_tests.test_utilities import Utils
+from megatron.core import ModelParallelConfig
 import megatron.core.pipeline_parallel.schedules as schedule
 from pytest_mock import mocker 
 import pytest
@@ -20,8 +21,8 @@ def test_get_forward_backward_func():
 def test_deallocate_output_tensor():
     out = torch.tensor([[1, 2, 3], [4, 5, 6]])
     schedule.deallocate_output_tensor(out)
-    assert(out.nelement() == 1) 
-
+    assert(out.nelement() == 6) 
+""" 
 def test_forward_backward_func_without_pipeline_parallel(mocker):
     from megatron.core.pipeline_parallel import get_forward_backward_func
 
@@ -45,12 +46,18 @@ def test_forward_backward_func_without_pipeline_parallel(mocker):
     assert(schedule.get_forward_backward_func() == schedule.forward_backward_no_pipelining)
 
     mocker.patch("megatron.core.pipeline_parallel.schedules.custom_backward", return_value=2)
+    config = ModelParallelConfig(
+        pipeline_model_parallel_size = 1
+    )
+    model.config = config
 
     losses_reduced = forward_backward_func(
         forward_step_func=forward_step_func,
         data_iterator=None,
         model=[model],
         num_microbatches=4,
+        seq_length=None,
+        micro_batch_size=None,
         forward_only=False) 
     
     loss_reduced_expected = [{'loss_reduced': rank}, {'loss_reduced': rank}, {'loss_reduced': rank}, {'loss_reduced': rank}]
@@ -84,15 +91,20 @@ def test_forward_backward_func_with_pipeline_parallel(mocker):
     micro_batch_size = 8
     hidden_size = 256
 
+    config = ModelParallelConfig(
+        pipeline_model_parallel_size = 4,
+        sequence_parallel = False
+    )
+    model.config = config
+    
     losses_reduced = forward_backward_func(
         forward_step_func=forward_step_func,
         data_iterator=None,
         dtype=torch.float32,
         model=[model],
         num_microbatches= micro_batch_size,
-        tensor_shape=[sequence_length, micro_batch_size, hidden_size],
-        decoder_seq_length=sequence_length,
-        sequence_parallel=False,
+        seq_length=sequence_length,
+        micro_batch_size=micro_batch_size,
         forward_only=True) 
     
     loss_reduced_expected = [{'loss_reduced': rank}, {'loss_reduced': rank}, {'loss_reduced': rank}, {'loss_reduced': rank}]
@@ -101,7 +113,7 @@ def test_forward_backward_func_with_pipeline_parallel(mocker):
         assert(i['loss_reduced'] == j['loss_reduced'])
     Utils.destroy_model_parallel()  
 
-""" 
+
 def test_forward_backward_func_with_interleaving(mocker):
     from megatron.core.pipeline_parallel import get_forward_backward_func
     from megatron.core.enums import ModelType

tests/unit_tests/transformer/test_attention.py

+# Copyright (c) 2023, NVIDIA CORPORATION. All rights reserved.
+
+import pytest
+
+import torch
+
+from megatron.core.transformer.attention import SelfAttention
+from tests.unit_tests.test_utilities import Utils
+from megatron.core.tensor_parallel.random import model_parallel_cuda_manual_seed
+from megatron.core.transformer.transformer_config import TransformerConfig
+
+class TestParallelAttention:
+
+    def setup_method(self, method):
+        Utils.initialize_model_parallel(1,1)
+        model_parallel_cuda_manual_seed(123)
+        self.transformer_config = TransformerConfig(num_layers=2, hidden_size=12, num_attention_heads=4, use_cpu_initialization=True)
+        self.parallel_attention = SelfAttention(self.transformer_config)
+
+
+    def teardown_method(self, method):
+        Utils.destroy_model_parallel()
+
+    def test_constructor(self):
+        assert isinstance(self.parallel_attention, SelfAttention)
+        assert self.parallel_attention.layer_number == 1
+
+        num_weights = sum([p.numel() for p in self.parallel_attention.parameters()])
+        assert num_weights == 648
+
+    def test_cpu_forward(self):
+        # we can't currently do this because the global memory buffer is on GPU
+        pass
+
+    def test_gpu_forward(self):
+
+        config = self.parallel_attention.config
+        sequence_length = 32
+        micro_batch_size = 2
+
+        self.parallel_attention.cuda()
+
+        # [sequence length, batch size, hidden size]
+        hidden_states = torch.ones((sequence_length, micro_batch_size, self.parallel_attention.config.hidden_size))
+        hidden_states = hidden_states.cuda()
+
+        attention_mask = torch.ones((1, 1, sequence_length, sequence_length), dtype=bool).cuda()
+
+        output, bias = self.parallel_attention(hidden_states, attention_mask)
+
+        assert config.recompute_granularity is None
+        assert output.shape[0] == sequence_length
+        assert output.shape[1] == micro_batch_size
+        assert output.shape[2] == config.hidden_size
+        assert bias.shape[0] == config.hidden_size
+
+    def test_checkpointed_gpu_forward(self):
+        transformer_config = self.transformer_config
+        transformer_config.recompute_granularity='selective'
+        checkpointed_parallel_attention = SelfAttention(transformer_config)
+        config = checkpointed_parallel_attention.config
+
+        sequence_length = 32
+        micro_batch_size = 2
+
+        checkpointed_parallel_attention.cuda()
+
+        # [sequence length, batch size, hidden size]
+        hidden_states = torch.ones(
+            (sequence_length, micro_batch_size, checkpointed_parallel_attention.config.hidden_size)
+        )
+        hidden_states = hidden_states.cuda()
+
+        attention_mask = torch.ones((1, 1, sequence_length, sequence_length), dtype=bool).cuda()
+
+        output, bias = checkpointed_parallel_attention(hidden_states, attention_mask)
+
+        assert config.recompute_granularity == 'selective'
+        assert output.shape[0] == sequence_length
+        assert output.shape[1] == micro_batch_size
+        assert output.shape[2] == config.hidden_size
+        assert bias.shape[0] == config.hidden_size

tests/unit_tests/transformer/test_core_attention.py

+# Copyright (c) 2023, NVIDIA CORPORATION. All rights reserved.
+
+
+import pytest
+
+import torch
+
+from megatron.core.transformer.attention import CrossAttention
+""" 
+
+@pytest.fixture
+def core_attention(transformer_config):
+    return CrossAttention(transformer_config)
+
+
+class TestCoreAttention:
+    def test_constructor(self, core_attention):
+        assert isinstance(core_attention, CrossAttention)
+        assert core_attention.layer_number == 1
+
+        num_weights = sum([p.numel() for p in core_attention.parameters()])
+        assert num_weights == 0
+
+    def test_cpu_forward(self, core_attention):
+        # we can't currently do this because the global memory buffer is on GPU
+        pass
+
+    def test_gpu_forward(self, core_attention):
+
+        # destroy_global_memory_buffer()
+        # _set_global_memory_buffer()
+        # model_parallel_cuda_manual_seed(123)
+
+        core_attention.cuda()
+        config = core_attention.config
+        sequence_length = 32
+        micro_batch_size = 2
+        # query_layer (float): [sequence_length, micro_batch_size, num_attention_heads, hidden_size / num_attention_heads]
+        query_layer = torch.ones(
+            (
+                sequence_length,
+                micro_batch_size,
+                config.num_attention_heads,
+                config.hidden_size // config.num_attention_heads,
+            )
+        ).cuda()
+
+        key_layer = torch.ones_like(query_layer).cuda()
+
+        value_layer = torch.ones_like(query_layer).cuda()
+
+        attention_mask = torch.ones((1, 1, sequence_length, sequence_length), dtype=bool).cuda()
+
+        context_layer = core_attention(
+            query_layer=query_layer, key_layer=key_layer, value_layer=value_layer, attention_mask=attention_mask
+        )
+
+        assert context_layer.shape[0] == sequence_length
+        assert context_layer.shape[1] == micro_batch_size
+        assert context_layer.shape[2] == config.hidden_size
+        assert context_layer.device.type == 'cuda'
+        assert context_layer.dtype == torch.float32
+
+"""
\ No newline at end of file

tests/unit_tests/transformer/test_mlp.py

+# Copyright (c) 2023, NVIDIA CORPORATION. All rights reserved.
+
+import pytest
+
+import torch
+
+from megatron.core.transformer.mlp import MLP
+from tests.unit_tests.test_utilities import Utils
+from megatron.core.tensor_parallel.random import model_parallel_cuda_manual_seed
+from megatron.core.transformer.transformer_config import TransformerConfig
+
+class TestParallelMLP:
+
+    def setup_method(self, method):
+        Utils.initialize_model_parallel(1,1)
+        model_parallel_cuda_manual_seed(123)
+        transformer_config = TransformerConfig(num_layers=2, hidden_size=12, num_attention_heads=4, use_cpu_initialization=True)
+        self.mlp = MLP(transformer_config)
+
+    def teardown_method(self, method):
+        Utils.destroy_model_parallel()
+
+    def test_constructor(self):
+        assert isinstance(self.mlp, MLP)
+
+        num_weights = sum([p.numel() for p in self.mlp.parameters()])
+        assert num_weights == 1236
+
+    """
+    def test_cpu_forward(self, mlp):
+        # [sequence length, micro batch size, hidden size]
+        hidden_states = torch.ones((32, 2, mlp.config.hidden_size))
+        output, output_bias = mlp(hidden_states)
+        assert output.shape[0] == 32
+        assert output.shape[1] == 2
+        assert output.shape[2] == mlp.config.hidden_size
+        assert output_bias.shape[0] == mlp.config.hidden_size
+        assert output.dtype == torch.float32
+    """
+
+    @pytest.mark.skipif(not torch.cuda.is_available(), reason="CUDA not available")
+    def test_gpu_forward(self):
+        mlp = self.mlp
+        mlp.cuda()
+        # [sequence length, batch size, hidden size]
+        hidden_states = torch.ones((32, 2, mlp.config.hidden_size))
+        hidden_states = hidden_states.cuda()
+        output, output_bias = mlp(hidden_states)
+        assert output.shape[0] == 32
+        assert output.shape[1] == 2
+        assert output.shape[2] == mlp.config.hidden_size
+        assert output_bias.shape[0] == mlp.config.hidden_size
+        assert output.dtype == torch.float32
+        assert output.device.type == 'cuda'
+        assert output_bias.device.type == 'cuda'
+

tests/unit_tests/transformer/test_module.py

+# Copyright (c) 2023, NVIDIA CORPORATION. All rights reserved.
+
+import pytest
+
+import torch
+
+from megatron.core.transformer.module import Float16Module, MegatronModule
+from megatron.core.transformer.transformer_config import TransformerConfig
+from tests.unit_tests.test_utilities import Utils
+from megatron.core.tensor_parallel.random import model_parallel_cuda_manual_seed
+
+DEVICE_CAPABILITY = None
+if torch.cuda.is_available():
+    DEVICE_CAPABILITY = torch.cuda.get_device_capability()
+
+
+class DummyModule(MegatronModule):
+    # def __init__(self, config: TransformerConfig, share_embeddings_and_output_weights=True):
+    def __init__(self, config: TransformerConfig):
+        super().__init__(config)
+
+        self.linear = torch.nn.modules.Linear(in_features=2, out_features=1)
+
+    def forward(self, x):
+        return self.linear(x)
+
+class TestMegatronModule:
+
+    def setup_method(self, method):
+        Utils.initialize_model_parallel(1,1)
+        model_parallel_cuda_manual_seed(123)
+        transformer_config = TransformerConfig(num_layers=2, hidden_size=12, num_attention_heads=4, use_cpu_initialization=True)
+        self.megatron_module = DummyModule(config=transformer_config).cuda()
+
+    def teardown_method(self, method):
+        Utils.destroy_model_parallel()   
+
+    def test_megatron_module(self):
+        megatron_module = self.megatron_module
+        assert megatron_module
+        assert megatron_module.config.hidden_size == 12
+        assert megatron_module.config.ffn_hidden_size == 48
+        assert megatron_module.linear.weight.dtype == torch.float32
+
+        x = torch.ones((2, 2)).cuda()
+        assert megatron_module(x).dtype == torch.float32
+
+        # TODO: test bad configs actually fail
+        # failed_module = megatron_module
+        # failed_module.fp16 = True
+        # failed_module.bf16 = True
+
+
+class TestFloat16Module:
+
+    def setup_method(self, method):
+        Utils.initialize_model_parallel(1,1)
+        model_parallel_cuda_manual_seed(123)
+        self.transformer_config = TransformerConfig(num_layers=2, hidden_size=12, num_attention_heads=4, use_cpu_initialization=True)
+        self.megatron_module = DummyModule(config=self.transformer_config).cuda()
+
+    def teardown_method(self, method):
+        Utils.destroy_model_parallel()   
+        
+    def test_fp16_module(self):
+        transformer_config = self.transformer_config
+        megatron_module = self.megatron_module
+        transformer_config.fp16 = True
+        fp16_module = Float16Module(config=transformer_config, module=megatron_module)
+
+        assert fp16_module
+        assert fp16_module.config.hidden_size == 12
+        assert fp16_module.config.ffn_hidden_size == 48
+        assert fp16_module.module.linear.weight.dtype == torch.float16
+
+        x = torch.ones((2, 2)).cuda()
+        # inputs are converted to fp16 then outputs are converted to fp32
+        assert fp16_module(x).dtype == torch.float32
+
+    pytest.mark.skipif(
+        not DEVICE_CAPABILITY or DEVICE_CAPABILITY[0] < 8, reason='bfloat16 is not supported on this device'
+    )
+
+    def test_bf16_module(self):
+        transformer_config = self.transformer_config
+        megatron_module = self.megatron_module
+        transformer_config.bf16 = True
+        bf16_module = Float16Module(config=transformer_config, module=megatron_module)
+
+        assert bf16_module
+        assert bf16_module.config.hidden_size == 12
+        assert bf16_module.config.ffn_hidden_size == 48
+        assert bf16_module.module.linear.weight.dtype == torch.bfloat16
+
+        x = torch.ones((2, 2)).cuda()
+        # inputs are converted to bf16 then outputs are converted to fp32
+        assert bf16_module(x).dtype == torch.float32
+

tests/unit_tests/transformer/test_transformer_block.py

+# Copyright (c) 2023, NVIDIA CORPORATION. All rights reserved.
+
+import os
+import pytest
+
+import torch
+from megatron.core import dist_checkpointing
+
+from megatron.core.transformer.transformer_config import TransformerConfig
+from megatron.core.transformer.transformer_layer import TransformerLayer
+from megatron.core.transformer.transformer_block import TransformerBlock
+from tests.unit_tests.test_utilities import Utils
+from megatron.core.tensor_parallel.random import model_parallel_cuda_manual_seed
+
+class TestParallelTransformerBlock:
+
+    def setup_method(self, method):
+        Utils.initialize_model_parallel(1,1)
+        model_parallel_cuda_manual_seed(123)
+        self.transformer_config = TransformerConfig(num_layers=2, hidden_size=12, num_attention_heads=4, use_cpu_initialization=True)
+        self.parallel_transformer_block = TransformerBlock(self.transformer_config)
+
+    def teardown_method(self, method):
+        Utils.destroy_model_parallel() 
+
+    def test_constructor(self):
+        parallel_transformer_block = self.parallel_transformer_block
+        assert isinstance(parallel_transformer_block, TransformerBlock)
+        num_weights = sum([p.numel() for p in parallel_transformer_block.parameters()])
+        assert num_weights == 3792
+        assert parallel_transformer_block.num_layers_per_pipeline_rank == 2
+        assert len(parallel_transformer_block.layers) == 2
+        layer_0: TransformerLayer = parallel_transformer_block._get_layer(0)
+        assert layer_0.layer_number == 1
+        layer_1: TransformerLayer = parallel_transformer_block._get_layer(1)
+        assert layer_1.layer_number == 2
+
+    def test_gpu_forward(self):
+        parallel_transformer_block = self.parallel_transformer_block
+        config: TransformerConfig = parallel_transformer_block.config
+
+        sequence_length = 32
+        micro_batch_size = 2
+        parallel_transformer_block.cuda()
+
+        # [sequence length, batch size, hidden size]
+        hidden_states = torch.ones((sequence_length, micro_batch_size, config.hidden_size))
+        hidden_states = hidden_states.cuda()
+
+        attention_mask = torch.ones((1, 1, sequence_length, sequence_length), dtype=bool).cuda()
+
+        hidden_states = parallel_transformer_block(hidden_states=hidden_states, attention_mask=attention_mask)
+        assert hidden_states.shape[0] == sequence_length
+        assert hidden_states.shape[1] == micro_batch_size
+        assert hidden_states.shape[2] == config.hidden_size
+
+    def test_gpu_forward_full_checkpoint(self):
+        transformer_config = self.transformer_config
+        config = transformer_config
+        config.recompute_granularity = 'full'
+        config.recompute_method = 'block'
+        config.recompute_num_layers = config.num_layers
+        full_transformer_block = TransformerBlock(config)
+        assert full_transformer_block.config.recompute_granularity == 'full'
+        assert full_transformer_block.config.recompute_method == 'block'
+
+        sequence_length = 32
+        micro_batch_size = 2
+        full_transformer_block.cuda()
+
+        # [sequence length, batch size, hidden size]
+        hidden_states = torch.ones((sequence_length, micro_batch_size, config.hidden_size))
+        hidden_states = hidden_states.cuda()
+
+        attention_mask = torch.ones((1, 1, sequence_length, sequence_length), dtype=bool).cuda()
+
+        hidden_states = full_transformer_block(hidden_states=hidden_states, attention_mask=attention_mask)
+        assert hidden_states.shape[0] == sequence_length
+        assert hidden_states.shape[1] == micro_batch_size
+        assert hidden_states.shape[2] == config.hidden_size
+
+    def test_gpu_forward_selective_checkpoint(self):
+        transformer_config = self.transformer_config
+        config = transformer_config
+        config.recompute_granularity = 'selective'
+        selective_transformer_block = TransformerBlock(config)
+        assert selective_transformer_block.config.recompute_granularity == 'selective'
+        assert selective_transformer_block.checkpoint_core_attention
+
+        sequence_length = 32
+        micro_batch_size = 2
+        selective_transformer_block.cuda()
+
+        # [sequence length, batch size, hidden size]
+        hidden_states = torch.ones((sequence_length, micro_batch_size, config.hidden_size))
+        hidden_states = hidden_states.cuda()
+
+        attention_mask = torch.ones((1, 1, sequence_length, sequence_length), dtype=bool).cuda()
+
+        hidden_states = selective_transformer_block(hidden_states=hidden_states, attention_mask=attention_mask)
+        assert hidden_states.shape[0] == sequence_length
+        assert hidden_states.shape[1] == micro_batch_size
+        assert hidden_states.shape[2] == config.hidden_size

tests/unit_tests/transformer/test_transformer_layer.py

+# Copyright (c) 2023, NVIDIA CORPORATION. All rights reserved.
+
+
+import pytest
+
+import torch
+
+from megatron.core.transformer.transformer_config import TransformerConfig
+from megatron.core.transformer.transformer_layer import TransformerLayer
+from tests.unit_tests.test_utilities import Utils
+from megatron.core.tensor_parallel.random import model_parallel_cuda_manual_seed
+from megatron.core.transformer.transformer_config import TransformerConfig
+
+
+
+class TestParallelTransformerLayer:
+    
+    def setup_method(self, method):
+        Utils.initialize_model_parallel(1,1)
+        model_parallel_cuda_manual_seed(123)
+        transformer_config = TransformerConfig(num_layers=2, hidden_size=12, num_attention_heads=4, use_cpu_initialization=True)
+        self.parallel_transformer_layer = TransformerLayer(transformer_config)
+
+    def teardown_method(self, method):
+        Utils.destroy_model_parallel()
+
+    def test_constructor(self):
+        parallel_transformer_layer = self.parallel_transformer_layer
+        assert isinstance(parallel_transformer_layer, TransformerLayer)
+        assert parallel_transformer_layer.layer_number == 1
+
+        num_weights = sum([p.numel() for p in parallel_transformer_layer.parameters()])
+        assert num_weights == 1884
+
+    def test_gpu_forward(self):
+        parallel_transformer_layer = self.parallel_transformer_layer
+        config: TransformerConfig = parallel_transformer_layer.config
+        sequence_length = 32
+        micro_batch_size = 2
+        parallel_transformer_layer.cuda()
+
+        # [sequence length, batch size, hidden size]
+        hidden_states = torch.ones((sequence_length, micro_batch_size, config.hidden_size))
+        hidden_states = hidden_states.cuda()
+
+        attention_mask = torch.ones((1, 1, sequence_length, sequence_length), dtype=bool).cuda()
+
+        hidden_states = parallel_transformer_layer(hidden_states=hidden_states, attention_mask=attention_mask)
+        assert hidden_states.shape[0] == sequence_length
+        assert hidden_states.shape[1] == micro_batch_size
+        assert hidden_states.shape[2] == config.hidden_size

tools/autoformat.sh

+#!/bin/bash
+
+SCRIPT_DIR=$( cd -- "$( dirname -- "${BASH_SOURCE[0]}" )" &> /dev/null && pwd )
+
+# for now we just format core
+
+black ${SCRIPT_DIR}/../megatron/core
+isort ${SCRIPT_DIR}/../megatron/core

tools/bert_embedding/embed.py

@@ -11,9 +11,10 @@ from tqdm import tqdm
 
 from megatron import get_args, get_tokenizer, print_rank_0
 from megatron import core
+from megatron.arguments import core_transformer_config_from_args
 from megatron.core.enums import ModelType
+from megatron.core.pipeline_parallel import get_forward_backward_func
 from megatron.model import BertModel
-from megatron.schedules import get_forward_backward_func
 from megatron.training import setup_model_and_optimizer
 
 from .dataset import BertEmbeddingDataset
@@ -28,8 +29,10 @@ def model_provider(pre_process=True, post_process=True):
     print_rank_0(" > build Bert model.")
 
     args = get_args()
+    config = core_transformer_config_from_args(args)
     num_tokentypes = 2 if args.bert_binary_head else 0
     model = BertModel(
+        config=config,
         num_tokentypes=num_tokentypes,
         add_binary_head=args.bert_binary_head,
         parallel_output=True,

tools/bert_embedding/utils.py

@@ -104,14 +104,14 @@ def get_missing_blocks(workdir, n_samples, block_size,
             try:
                 f = h5py.File(path, "r")
             except:
-                raise Exception("unable to open/validate '%s'." % path)
+                # raise Exception("unable to open/validate '%s'." % path)
                 os.remove(path)
                 continue
 
             try:
                 validate(f)
             except:
-                raise Exception("delete block file.")
+                # raise Exception("delete block file '%s'." % path)
                 os.remove(path)
             finally:
                 f.close()
@@ -156,53 +156,38 @@ def get_missing_blocks_by_rank(workdir, n_samples, block_size,
     return len(missing_blocks), rank_missing_blocks
 
 
-class IdPathMap:
-    '''Maps indexes to the containing block path.
+class BlockPathMap:
+    '''Map an index to its containing block path.
 
-    This class optimizing the mapping of a large number of indexes to the
-    path of its containing block. For example, with block_size 1M, this class
-    stores 1/1M as many (long) path strings, saving memory.
+    The common use for this class is to have a directory of files containing
+    blocks of processed data, of uniform block size (e.g., 100k samples per
+    file). Each file must follow a naming convention of 'startIdx-endIdx.[ext]',
+    where 'endIdx' minus 'startIdx' must equal the block size, with the possible
+    exception of the final block. Given an input index, this class maps the
+    index to the containing block file.
     '''
 
-    def __init__(self, paths):
-        self.paths = paths
-        self.path_index_map = {p:i for i,p in enumerate(paths)}
-        self.id_index_map = {}
+    @classmethod
+    def from_dir(cls, _dir, block_size, ext="hdf5"):
+        '''Get list of block files, and create map.'''
+        assert os.path.isdir(_dir), f"directory not found, '{_dir}'."
+        return cls(sorted(glob.glob(_dir + f"/*.{ext}")), block_size)
+
+    def __init__(self, block_paths, block_size):
+        self.max_idx = 0
+        self.block_path_map = {}
+        for block_path in block_paths:
+            name = os.path.splitext(os.path.basename(block_path))[0]
+            start_idx, end_idx = [ int(i) for i in name.split("-") ]
+            self.block_path_map[start_idx] = block_path
+            self.max_idx = max(self.max_idx, end_idx)
+        self.block_size = block_size
 
     def __str__(self):
-        return "%d paths; %d ids" % (len(self.paths), len(self.id_index_map))
-
-    def add(self, id, path):
-        '''Map index to a path.'''
-        self.id_index_map[id] = self.path_index_map[path]
-
-    def __contains__(self, idx):
-        '''Index added to this object?'''
-        return idx in self.id_index_map
+        return "%d paths" % len(self.block_path_map)
 
     def __getitem__(self, idx):
-        '''Get path from index.'''
-        return self.paths[self.id_index_map[idx]]
-
-
-def path_to_range(path):
-    '''Parse start/end indexes from block path name (e.g., 00010-00011.hdf5 ->
-    (10, 11).'''
-    return tuple([
-        int(i) for i in os.path.splitext(
-            os.path.basename(path))[0].split("-")])
-
-
-def get_index_path_map(_dir):
-    '''Map contained indexes to block file path (on disk).'''
-
-    paths = sorted(glob.glob(_dir + "/*.hdf5"))
-
-    # Build index-path map.
-    idx_path_map = IdPathMap(paths)
-    for path in paths:
-        start_idx, end_idx = path_to_range(path)
-        for idx in range(start_idx, end_idx):
-            idx_path_map.add(idx, path)
-
-    return idx_path_map
+        '''Get block path from index.'''
+        block_start_idx = self.block_size * (idx // self.block_size)
+        block_path = self.block_path_map[block_start_idx]
+        return block_path

tools/checkpoint_loader_megatron.py

@@ -55,7 +55,7 @@ def _load_checkpoint(queue, args):
                 ]
 
     margs = parse_args()
-    margs = load_args_from_checkpoint(margs)
+    margs, checkpoint_args = load_args_from_checkpoint(margs)
 
     # Arguments do sanity checks on the world size, but we don't care,
     # so trick it into thinking we are plenty of processes
@@ -63,8 +63,11 @@ def _load_checkpoint(queue, args):
 
     margs = validate_args(margs)
 
-    def check_for_arg(arg_name):
+    def check_for_arg(arg_name, default=None):
         if getattr(margs, arg_name, None) is None:
+            if default is not None:
+                setattr(margs, arg_name, default)
+            else:
                 print(f"Checkpoint does not specify the argument {arg_name}. Exiting.")
                 print(f"Arguments: {margs}")
                 queue.put("exit")
@@ -77,10 +80,13 @@ def _load_checkpoint(queue, args):
     check_for_arg('seq_length')
     check_for_arg('num_attention_heads')
     check_for_arg('max_position_embeddings')
+    check_for_arg('position_embedding_type')
     check_for_arg('tokenizer_type')
     check_for_arg('iteration')
     check_for_arg('bert_binary_head')
+    check_for_arg('disable_bias_linear', False)
     check_for_arg('params_dtype')
+    check_for_arg('swiglu', False)
 
     # Determine how to make our models
     if args.model_type == 'GPT':
@@ -97,18 +103,38 @@ def _load_checkpoint(queue, args):
 
     consumed_train_samples = None
     consumed_valid_samples = None
-    def get_models(count, dtype, pre_process, post_process):
+    def get_models(count, dtype):
         nonlocal consumed_train_samples
         nonlocal consumed_valid_samples
-        models = []
+        model_array_len = margs.virtual_pipeline_model_parallel_size
+        if model_array_len is None:
+            model_array_len = 1
+        models = [[] for _ in range(model_array_len)]
+        pre_process = mpu.is_pipeline_first_stage()
+        post_process = mpu.is_pipeline_last_stage()
         for rank in range(count):
             mpu.set_tensor_model_parallel_rank(rank)
+            if margs.virtual_pipeline_model_parallel_size is not None:
+                model_ = []
+                for i in range(margs.virtual_pipeline_model_parallel_size):
+                    mpu.set_virtual_pipeline_model_parallel_rank(i)
+                    # Set pre_process and post_process only after virtual rank is set.
+                    pre_process = mpu.is_pipeline_first_stage()
+                    post_process = mpu.is_pipeline_last_stage()
+                    this_model = model_provider(
+                        pre_process=pre_process,
+                        post_process=post_process
+                    ).to(dtype)
+                    model_.append(this_model)
+            else:
+                pre_process = mpu.is_pipeline_first_stage()
+                post_process = mpu.is_pipeline_last_stage()
+                model_rank = 0
                 model_ = [model_provider(pre_process, post_process).to(dtype)]
             margs.consumed_train_samples = 0
             margs.consumed_valid_samples = 0
             load_checkpoint(model_, None, None)
-            assert(len(model_) == 1)
-            model_ = model_[0]
+
             if consumed_train_samples is not None:
                 assert(margs.consumed_train_samples == consumed_train_samples)
             else:
@@ -117,17 +143,14 @@ def _load_checkpoint(queue, args):
                 assert(margs.consumed_valid_samples == consumed_valid_samples)
             else:
                 consumed_valid_samples = margs.consumed_valid_samples
-            models.append(model_)
+            for vp_rank in range(model_array_len):
+                models[vp_rank].append(model_[vp_rank])
         return models
 
-    if margs.num_layers_per_virtual_pipeline_stage is not None:
-        print("Model with an interleaved pipeline schedule are not yet supported.")
-        queue.put("exit")
-        exit(1)
-
-    set_global_variables(margs)
+    set_global_variables(margs, build_tokenizer=False)
     mpu.set_tensor_model_parallel_world_size(margs.tensor_model_parallel_size)
     mpu.set_pipeline_model_parallel_world_size(margs.pipeline_model_parallel_size)
+    mpu.set_virtual_pipeline_model_parallel_world_size(margs.virtual_pipeline_model_parallel_size)
     fused_kernels.load(margs)
 
     # Get true (non-padded) vocab size
@@ -146,6 +169,9 @@ def _load_checkpoint(queue, args):
     # short aliases
     tp_size = margs.tensor_model_parallel_size
     pp_size = margs.pipeline_model_parallel_size
+    vp_size = margs.virtual_pipeline_model_parallel_size
+    if vp_size is None:
+        vp_size = 1
 
     # metadata
     md = types.SimpleNamespace()
@@ -159,15 +185,20 @@ def _load_checkpoint(queue, args):
     md.iteration = margs.iteration
     md.params_dtype = margs.params_dtype
     md.bert_binary_head = margs.bert_binary_head
+    md.output_layer = margs.untie_embeddings_and_output_weights
+    md.position_embedding_type = margs.position_embedding_type
+    md.linear_bias = margs.add_bias_linear
+    md.swiglu = margs.swiglu
     md.previous_tensor_parallel_size = margs.tensor_model_parallel_size
     md.previous_pipeline_parallel_size = margs.pipeline_model_parallel_size
     md.true_vocab_size = true_vocab_size
     md.make_vocab_size_divisible_by = margs.make_vocab_size_divisible_by
+    md.checkpoint_args = checkpoint_args
 
     # Get first pipe stage
     mpu.set_pipeline_model_parallel_rank(0)
-    post_process = pp_size == 1
-    models = get_models(tp_size, md.params_dtype, True, post_process)
+    all_models = [get_models(tp_size, md.params_dtype)]
+    models = all_models[0][0]
 
     md.consumed_train_samples = consumed_train_samples
     md.consumed_valid_samples = consumed_valid_samples
@@ -180,20 +211,26 @@ def _load_checkpoint(queue, args):
 
     # Send embeddings
     message = {
-        "position embeddings": models[0].language_model.embedding.position_embeddings.weight.data,
         "word embeddings": torch.cat(
             [models[tp_rank].language_model.embedding.word_embeddings.weight.data for tp_rank in range(tp_size)],
             dim = 0)
     }
+    if md.position_embedding_type == 'learned_absolute':
+        message["position embeddings"] = models[0].language_model.embedding.position_embeddings.weight.data
+    else:
+        assert not hasattr(models[0].language_model.embedding, 'position_embeddings')
 
     queue_put("embeddings", message)
 
     total_layer_num = 0
+    for vp_rank in range(vp_size):
+        mpu.set_virtual_pipeline_model_parallel_rank(vp_rank)
         for pp_rank in range(pp_size):
             if pp_rank > 0:
                 mpu.set_pipeline_model_parallel_rank(pp_rank)
-            post_process = pp_rank == pp_size - 1
-            models = get_models(tp_size, md.params_dtype, False, post_process)
+                if vp_rank == 0:
+                    all_models.append(get_models(tp_size, md.params_dtype))
+            models = all_models[pp_rank][vp_rank]
             for layer_num in range(len(models[0].language_model.encoder.layers)):
                 message = {}
 
@@ -201,9 +238,10 @@ def _load_checkpoint(queue, args):
                 layer = models[0].language_model.encoder.layers[layer_num]
                 message["input layernorm weight"] = layer.input_layernorm.weight.data
                 message["input layernorm bias"] = layer.input_layernorm.bias.data
-            message["dense bias"] = layer.self_attention.dense.bias.data
                 message["post layernorm weight"] = layer.post_attention_layernorm.weight.data
                 message["post layernorm bias"] = layer.post_attention_layernorm.bias.data
+                if md.linear_bias:
+                    message["dense bias"] = layer.self_attention.dense.bias.data
                     message["mlp l1 bias"] = layer.mlp.dense_4h_to_h.bias.data
 
                 # Grab all parallel tensors for this layer
@@ -216,19 +254,36 @@ def _load_checkpoint(queue, args):
                 for tp_rank, model in enumerate(models):
                     layer = model.language_model.encoder.layers[layer_num]
                     qkv_weight.append(layer.self_attention.query_key_value.weight.data)
-                qkv_bias.append(layer.self_attention.query_key_value.bias.data)
                     dense_weight.append(layer.self_attention.dense.weight.data)
                     mlp_l0_weight.append(layer.mlp.dense_h_to_4h.weight.data)
-                mlp_l0_bias.append(layer.mlp.dense_h_to_4h.bias.data)
                     mlp_l1_weight.append(layer.mlp.dense_4h_to_h.weight.data)
+                    if md.linear_bias:
+                        qkv_bias.append(layer.self_attention.query_key_value.bias.data)
+                        mlp_l0_bias.append(layer.mlp.dense_h_to_4h.bias.data)
 
-            # concat them
+                # Handle gated linear units
+                if md.swiglu:
+                    # concat all the first halves ('W's) and all the second halves ('V's)
+                    for tp_rank in range(tp_size):
+                        mlp_l0_weight[tp_rank] = torch.chunk(mlp_l0_weight[tp_rank], 2, dim=0)
+                    message["mlp l0 weight W"] = torch.cat([w[0] for w in mlp_l0_weight], dim=0)
+                    message["mlp l0 weight V"] = torch.cat([w[1] for w in mlp_l0_weight], dim=0)
+                else:
+                    message["mlp l0 weight"] = torch.cat(mlp_l0_weight, dim=0)
+
+                # simple concat of the rest
                 message["qkv weight"] = torch.cat(qkv_weight, dim=0)
-            message["qkv bias"] = torch.cat(qkv_bias, dim=0)
                 message["dense weight"] = torch.cat(dense_weight, dim=1)
-            message["mlp l0 weight"] = torch.cat(mlp_l0_weight, dim=0)
-            message["mlp l0 bias"] = torch.cat(mlp_l0_bias, dim=0)
                 message["mlp l1 weight"] = torch.cat(mlp_l1_weight, dim=1)
+                if md.linear_bias:
+                    message["qkv bias"] = torch.cat(qkv_bias, dim=0)
+                    if md.swiglu:
+                        for tp_rank in range(tp_size):
+                            mlp_l0_bias[tp_rank] = torch.chunk(mlp_l0_bias[tp_rank], 2, dim=0)
+                        message["mlp l0 bias W"] = torch.cat([b[0] for b in mlp_l0_bias],dim=0)
+                        message["mlp l0 bias V"] = torch.cat([b[1] for b in mlp_l0_bias],dim=0)
+                    else:
+                        message["mlp l0 bias"] = torch.cat(mlp_l0_bias, dim=0)
 
                 queue_put(f"transformer layer {total_layer_num}", message)
 
@@ -241,6 +296,15 @@ def _load_checkpoint(queue, args):
     }
     queue_put("final layernorm", message)
 
+    if md.output_layer:
+        message = {
+            "weight": torch.cat(
+                [models[tp_rank].language_model.output_layer.weight.data for tp_rank in range(tp_size)],
+                dim = 0)
+        }
+        queue_put("output layer", message)
+
+
     # Send BERT lm head and binary head if it exists
     if md.model_type == 'BERT':
         message = {

tools/checkpoint_saver_megatron.py

@@ -96,6 +96,7 @@ def save_checkpoint(queue, args):
                 '--seq-length', str(md.seq_length),
                 '--num-attention-heads', str(md.num_attention_heads),
                 '--max-position-embeddings', str(md.max_position_embeddings),
+                '--position-embedding-type', str(md.position_embedding_type),
                 '--tokenizer-type', str(md.tokenizer_type),
                 '--tensor-model-parallel-size', str(args.target_tensor_parallel_size),
                 '--pipeline-model-parallel-size', str(args.target_pipeline_parallel_size),
@@ -121,12 +122,47 @@ def save_checkpoint(queue, args):
     elif md.params_dtype == torch.bfloat16:
         sys.argv.append('--bf16')
 
+    if md.output_layer:
+        sys.argv.append('--untie-embeddings-and-output-weights')
+    if not md.linear_bias:
+        sys.argv.append('--disable-bias-linear')
+
     if md.model_type == 'BERT' and not md.bert_binary_head:
         sys.argv.append('--bert-no-binary-head')
 
     margs = parse_args()
+
+
+    if hasattr (md, 'checkpoint_args'):
+        # These are arguments that we are either changing, or cause problems for validation if they are set
+        # Note that some of these deal with T5 so will need to be changed if we support T5.
+        args_to_keep = ['tensor_model_parallel_size', 'pipeline_model_parallel_size', 'world_size', 'params_dtype',
+                        'num_layers_per_virtual_pipeline_stage', 'virtual_pipeline_model_parallel_size',
+                        'masked_softmax_fusion', 'bias_gelu_fusion', 'bias_dropout_fusion',
+                        'sequence_parallel', 'async_tensor_model_parallel_allreduce',
+                        'no_load_optim', 'no_load_rng', 'no_save_optim', 'no_save_rng',
+                        'vocab_file', 'tokenizer_model',
+                        'save_interval', 'save',
+                        'perform_initialization', 'use_cpu_initialization',
+                        'encoder_num_layers', 'encoder_seq_length',
+                        'distribute_saved_activations',
+                        'train_iters', 'lr_decay_iters', 'lr_warmup_iters', 'lr_warmup_fraction',
+                        'start_weight_decay', 'end_weight_decay']
+
+
+        for arg, value in vars(md.checkpoint_args).items():
+            if arg in args_to_keep:
+                continue
+            if not hasattr(margs, arg):
+                print(f"Checkpoint had argument {arg} but new arguments does not have this.")
+                continue
+            if getattr(margs, arg) != value:
+                print(f"Overwriting default {arg} value {getattr(margs, arg)} with value from checkpoint {value}.")
+                setattr(margs, arg, value)
+
     validate_args(margs)
-    set_global_variables(margs)
+
+    set_global_variables(margs, build_tokenizer=False)
 
     # margs = megatron args
     margs = get_args()
@@ -164,6 +200,8 @@ def save_checkpoint(queue, args):
     #-----------
     embeddings_msg = queue_get("embeddings")
 
+    pos_embed = None
+    if md.position_embedding_type == 'learned_absolute':
         pos_embed = embeddings_msg.pop("position embeddings")
     orig_word_embed = embeddings_msg.pop("word embeddings")
     check_message(embeddings_msg)
@@ -203,9 +241,11 @@ def save_checkpoint(queue, args):
     post_process = args.target_pipeline_parallel_size == 1
     models = get_models(args.target_tensor_parallel_size, md.params_dtype, True, post_process)
     for tp_rank, model in enumerate(models):
-        print(f"word embeddings shape {model.language_model.embedding.word_embeddings.weight.shape}")
         model.language_model.embedding.word_embeddings.weight.data.copy_(out_word_embed[tp_rank])
+        if pos_embed is not None:
             model.language_model.embedding.position_embeddings.weight.data.copy_(pos_embed)
+        else:
+            assert not hasattr(model.language_model.embedding, "position_embeddings")
 
     # Transformer layers
     #-------------------
@@ -223,18 +263,33 @@ def save_checkpoint(queue, args):
             # duplicated tensors
             input_layernorm_weight = msg.pop("input layernorm weight")
             input_layernorm_bias = msg.pop("input layernorm bias")
-            dense_bias = msg.pop("dense bias")
             post_layernorm_weight = msg.pop("post layernorm weight")
             post_layernorm_bias = msg.pop("post layernorm bias")
+            if md.linear_bias:
+                dense_bias = msg.pop("dense bias")
                 mlp_l1_bias = msg.pop("mlp l1 bias")
 
             # Split up the parallel tensors
             qkv_weight = torch.chunk(msg.pop("qkv weight"), args.target_tensor_parallel_size, dim=0)
-            qkv_bias = torch.chunk(msg.pop("qkv bias"), args.target_tensor_parallel_size, dim=0)
             dense_weight = torch.chunk(msg.pop("dense weight"), args.target_tensor_parallel_size, dim=1)
+            mlp_l1_weight = torch.chunk(msg.pop("mlp l1 weight"), args.target_tensor_parallel_size, dim=1)
+
+            # Special handling for swiglu
+            if md.swiglu:
+                mlp_l0_weight_W = torch.chunk(msg.pop("mlp l0 weight W"), args.target_tensor_parallel_size, dim=0)
+                mlp_l0_weight_V = torch.chunk(msg.pop("mlp l0 weight V"), args.target_tensor_parallel_size, dim=0)
+                mlp_l0_weight = [torch.cat(weights, dim=0) for weights in zip(mlp_l0_weight_W, mlp_l0_weight_V)]
+            else:
                 mlp_l0_weight = torch.chunk(msg.pop("mlp l0 weight"), args.target_tensor_parallel_size, dim=0)
+
+            if md.linear_bias:
+                qkv_bias = torch.chunk(msg.pop("qkv bias"), args.target_tensor_parallel_size, dim=0)
+                if md.swiglu:
+                    mlp_l0_bias_W = torch.chunk(msg.pop("mlp l0 bias W"), args.target_tensor_parallel_size, dim=0)
+                    mlp_l0_bias_V = torch.chunk(msg.pop("mlp l0 bias V"), args.target_tensor_parallel_size, dim=0)
+                    mlp_l0_bias = [torch.cat(bias, dim=0) for bias in zip(mlp_l0_bias_W, mlp_l0_bias_V)]
+                else:
                     mlp_l0_bias = torch.chunk(msg.pop("mlp l0 bias"), args.target_tensor_parallel_size, dim=0)
-            mlp_l1_weight = torch.chunk(msg.pop("mlp l1 weight"), args.target_tensor_parallel_size, dim=1)
 
             # Save them to the model
             for tp_rank in range(args.target_tensor_parallel_size):
@@ -242,15 +297,17 @@ def save_checkpoint(queue, args):
                 l.input_layernorm.weight.data.copy_(input_layernorm_weight)
                 l.input_layernorm.bias.data.copy_(input_layernorm_bias)
                 l.self_attention.query_key_value.weight.data.copy_(qkv_weight[tp_rank])
-                l.self_attention.query_key_value.bias.data.copy_(qkv_bias[tp_rank])
                 l.self_attention.dense.weight.data.copy_(dense_weight[tp_rank])
-                l.self_attention.dense.bias.data.copy_(dense_bias)
                 l.post_attention_layernorm.weight.data.copy_(post_layernorm_weight)
                 l.post_attention_layernorm.bias.data.copy_(post_layernorm_bias)
                 l.mlp.dense_h_to_4h.weight.data.copy_(mlp_l0_weight[tp_rank])
-                l.mlp.dense_h_to_4h.bias.data.copy_(mlp_l0_bias[tp_rank])
                 l.mlp.dense_4h_to_h.weight.data.copy_(mlp_l1_weight[tp_rank])
+                if md.linear_bias:
+                    l.self_attention.query_key_value.bias.data.copy_(qkv_bias[tp_rank])
+                    l.self_attention.dense.bias.data.copy_(dense_bias)
+                    l.mlp.dense_h_to_4h.bias.data.copy_(mlp_l0_bias[tp_rank])
                     l.mlp.dense_4h_to_h.bias.data.copy_(mlp_l1_bias)
+
             total_layer_num = total_layer_num + 1
             check_message(msg)
 
@@ -262,13 +319,24 @@ def save_checkpoint(queue, args):
             for tp_rank in range(args.target_tensor_parallel_size):
                 models[tp_rank].language_model.encoder.final_layernorm.weight.data.copy_(final_layernorm_weight)
                 models[tp_rank].language_model.encoder.final_layernorm.bias.data.copy_(final_layernorm_bias)
-                if pp_rank != 0:
+                if pp_rank != 0 and not md.output_layer:
                     # Copy word embeddings to final pipeline rank
                     models[tp_rank].word_embeddings.weight.data.copy_(out_word_embed[tp_rank])
             del final_layernorm_weight
             del final_layernorm_bias
             check_message(msg)
 
+            if md.output_layer:
+                msg = queue_get("output layer")
+                if not hasattr(models[0].language_model, 'output_layer'):
+                    print("ERROR: got an output layer, but model does not have one")
+                    exit(1)
+                output_layer_weight = torch.chunk(msg.pop("weight"), args.target_tensor_parallel_size, dim=0)
+                for tp_rank in range(args.target_tensor_parallel_size):
+                    models[tp_rank].language_model.output_layer.weight.data.copy_(output_layer_weight[tp_rank])
+                del output_layer_weight
+                check_message(msg)
+
             msg = queue_get()
             if msg != "done" and msg["name"] == "pooler":
                 if not hasattr(models[0].language_model, 'pooler'):

tools/openwebtext/README.md

@@ -14,7 +14,7 @@ The following steps show how to prepare training dataset to train the mode.
 1. Download the deduplicated URLs from [jcpeterson](https://mega.nz/#F!EZZD0YwJ!9_PlEQzdMVLaNdKv_ICNVQ!cc4RgQQZ)
 2. Remove blacklisted URLs.
 ```
-python blacklist_urls.py <path to the dowloaded deduplicated URLs> <filename for clean urls. e.g. clean_urls.txt>
+python blacklist_urls.py <path to the downloaded deduplicated URLs> <filename for clean urls. e.g. clean_urls.txt>
 ```
 3. Download the content from the clean urls with [openwebtext's utilities](https://github.com/eukaryote31/openwebtext/blob/master/download.py). 
 
@@ -37,7 +37,7 @@ python group_duplicate_urls.py <possible duplicate urls file> <output file conta
 ```
 4. Remove similar documents that were detected in the last step.
 ```
-python remove_group_duplicates.py <file containing simialr documents> <cleaned data file> <outputfile containing deduplicate data>
+python remove_group_duplicates.py <file containing similar documents> <cleaned data file> <outputfile containing deduplicate data>
 ```
 
 5. Shuffle the dataset.

tools/openwebtext/blacklist_urls.py

-# Copyright (c) 2022, NVIDIA CORPORATION. All rights reserved.
+# Copyright (c) 2023, NVIDIA CORPORATION. All rights reserved.
+
+# WARNING! This file contains a blacklist of known malicious sites and thus contains some NSFW language.
 
 
 import glob
@@ -47,6 +49,7 @@ domain_blacklist = set([
     'google',
     'gunprime',
     'gyazo',
+    'horsefucker',
     'hotdealstar',
     'imagefap',
     'imageshack',

tools/preprocess_data.py

 # Copyright (c) 2022, NVIDIA CORPORATION. All rights reserved.
 
-"""Processing data for pretraining."""
-
+"""Processing large data for pretraining."""
 import argparse
+import math
 import json
-import multiprocessing
 import os
 import sys
 sys.path.append(os.path.abspath(os.path.join(os.path.dirname(__file__),
                                              os.path.pardir)))
 import time
-
+import gzip
+import glob
 import torch
+import numpy as np
+import multiprocessing
 try:
     import nltk
     nltk_available = True
@@ -39,6 +41,7 @@ class IdentitySplitter(object):
     def tokenize(self, *text):
         return text
 
+
 class Encoder(object):
     def __init__(self, args):
         self.args = args
@@ -51,33 +54,129 @@ class Encoder(object):
                 print("NLTK is not available to split sentences.")
                 exit()
             library = "tokenizers/punkt/{}.pickle".format(self.args.lang)
-            print("loading: " + library)
             splitter = nltk.load(library)
             if self.args.keep_newlines:
                 # this prevents punkt from eating newlines after sentences
                 Encoder.splitter = nltk.tokenize.punkt.PunktSentenceTokenizer(
-                    train_text=splitter._params,
-                    lang_vars=CustomLanguageVars())
+                    train_text = splitter._params,
+                    lang_vars = CustomLanguageVars())
             else:
                 Encoder.splitter = splitter
 
         else:
             Encoder.splitter = IdentitySplitter()
 
+    def split(self, json_line):
+        data = json.loads(json_line)
+        output = {}
+        for key in self.args.json_keys:
+            text = data[key]
+            max_len = 1000000
+            tokens_list = [Encoder.splitter.tokenize(text[i:i+max_len]) for i in range(0, len(text), max_len)]
+            output[key] = [tokens for partial in tokens_list for tokens in partial]
+        return json.dumps(output), len(json_line)
+
     def encode(self, json_line):
         data = json.loads(json_line)
         ids = {}
+        lens = {}
         for key in self.args.json_keys:
             text = data[key]
+            if isinstance(text, list):
+                sentences = text
+            else:
+                sentences = [text]
             doc_ids = []
-            for sentence in Encoder.splitter.tokenize(text):
+            sentence_lens = []
+            for sentence in sentences:
                 sentence_ids = Encoder.tokenizer.tokenize(sentence)
                 if len(sentence_ids) > 0:
-                    doc_ids.append(sentence_ids)
+                    doc_ids.extend(sentence_ids)
+                    sentence_lens.append(len(sentence_ids))
             if len(doc_ids) > 0 and self.args.append_eod:
-                doc_ids[-1].append(Encoder.tokenizer.eod)
+                doc_ids.append(Encoder.tokenizer.eod)
+                sentence_lens[-1] += 1
             ids[key] = doc_ids
-        return ids, len(json_line)
+            lens[key] = sentence_lens
+        return ids, lens, len(json_line)
+
+
+class Partition(object):
+    def __init__(self, args, workers):
+        self.args = args
+        self.workers = workers
+
+    def print_processing_stats(self, count, proc_start, total_bytes_processed):
+        if count % self.args.log_interval == 0:
+            current = time.time()
+            elapsed = current - proc_start
+            mbs = total_bytes_processed/elapsed/1024/1024
+            print(f"Processed {count} documents",
+                  f"({count/elapsed} docs/s, {mbs} MB/s).",
+                  file=sys.stderr)
+
+    def split_sentences(self, file_name):
+        input_file_name, output_file_name = file_name
+        print("Opening", input_file_name)
+        fin = open(input_file_name, 'r', encoding='utf-8')
+        fout = open(output_file_name, 'w')
+
+        encoder = Encoder(self.args)
+        pool = multiprocessing.Pool(self.workers, initializer=encoder.initializer)
+        split_docs = pool.imap(encoder.split, fin, 32)
+
+        proc_start = time.time()
+        total_bytes_processed = 0
+        for i, (doc, bytes_processed) in enumerate(split_docs, start=1):
+            total_bytes_processed += bytes_processed
+            fout.write(doc + "\n")
+            self.print_processing_stats(i, proc_start, total_bytes_processed)
+
+        fin.close()
+        fout.close()
+
+
+    def process_json_file(self, file_name):
+        input_file_name, output_prefix = file_name
+        print("Opening", input_file_name)
+        fin = open(input_file_name, 'r', encoding='utf-8')
+
+        startup_start = time.time()
+        encoder = Encoder(self.args)
+        tokenizer = build_tokenizer(self.args)
+        pool = multiprocessing.Pool(self.workers, initializer=encoder.initializer)
+        encoded_docs = pool.imap(encoder.encode, fin, 32)
+
+        level = "document"
+        if self.args.split_sentences:
+            level = "sentence"
+
+        output_bin_files = {}
+        output_idx_files = {}
+        builders = {}
+
+        for key in self.args.json_keys:
+            output_bin_files[key] = "{}_{}_{}.bin".format(output_prefix,
+                                                          key, level)
+            output_idx_files[key] = "{}_{}_{}.idx".format(output_prefix,
+                                                          key, level)
+            builders[key] = indexed_dataset.make_builder(output_bin_files[key],
+                                                   impl=self.args.dataset_impl,
+                                                   vocab_size=tokenizer.vocab_size)
+
+        startup_end = time.time()
+        proc_start = time.time()
+        total_bytes_processed = 0
+        print("Time to startup:", startup_end - startup_start)
+        for i, (doc, sentence_lens, bytes_processed) in enumerate(encoded_docs, start=1):
+            total_bytes_processed += bytes_processed
+            for key in doc.keys():
+                builders[key].add_doc(doc[key], sentence_lens[key])
+            self.print_processing_stats(i, proc_start, total_bytes_processed)
+
+        fin.close()
+        builders[key].finalize(output_idx_files[key])
+
 
 def get_args():
     parser = argparse.ArgumentParser()
@@ -94,20 +193,21 @@ def get_args():
     group = parser.add_argument_group(title='tokenizer')
     group.add_argument('--tokenizer-type', type=str, required=True,
                        choices=['BertWordPieceLowerCase','BertWordPieceCase',
-                                'GPT2BPETokenizer', 'SentencePieceTokenizer', 'GPTSentencePieceTokenizer'],
+                                'GPT2BPETokenizer', 'SentencePieceTokenizer',
+                                'GPTSentencePieceTokenizer', 'NullTokenizer'],
                        help='What type of tokenizer to use.')
+    group.add_argument('--tokenizer-model', type=str, default=None,
+                       help='YTTM tokenizer model.')
     group.add_argument('--vocab-file', type=str, default=None,
                        help='Path to the vocab file')
+    group.add_argument('--vocab-size', default=786,
+                       help='size of vocab for use with NullTokenizer')
     group.add_argument('--merge-file', type=str, default=None,
                        help='Path to the BPE merge file (if necessary).')
     group.add_argument('--append-eod', action='store_true',
                        help='Append an <eod> token to the end of a document.')
     group.add_argument('--lang', type=str, default='english',
                        help='Language to use for NLTK-powered sentence splitting.')
-    group.add_argument('--tokenizer-model', type=str, default=None,
-                       help='sentencepeice tokenizer model.')
-
-
     group = parser.add_argument_group(title='output data')
     group.add_argument('--output-prefix', type=str, required=True,
                        help='Path to binary output file without suffix')
@@ -116,51 +216,170 @@ def get_args():
 
     group = parser.add_argument_group(title='runtime')
     group.add_argument('--workers', type=int, required=True,
-                       help='Number of worker processes to launch')
-    group.add_argument('--chunk-size', type=int, required=True,
-                       help='Chunk size assigned to each worker process')
-    group.add_argument('--log-interval', type=int, default=100,
+                       help=('Number of worker processes to launch.'
+                             'A good default for fast pre-processing '
+                             'is: (workers * partitions) = available CPU cores.'))
+    group.add_argument('--partitions', type=int, default=1,
+                        help='Number of file partitions')
+    group.add_argument('--log-interval', type=int, default=1000,
                        help='Interval between progress updates')
+    group.add_argument('--keep-sequential-samples', action='store_true',
+                       help='Ensure ordering of samples in .jsonl files is '
+                            'preserved when using partitions>1.')
     args = parser.parse_args()
     args.keep_empty = False
 
-    if args.tokenizer_type.lower().startswith('bert'):
-        if not args.split_sentences:
-            print("Bert tokenizer detected, are you sure you don't want to split sentences?")
+    if args.tokenizer_type.lower().startswith('bert') and not args.split_sentences:
+        print("Are you sure you don't want to split sentences?")
 
     # some default/dummy values for the tokenizer
-    args.rank = 0
+    args.rank = 1
     args.make_vocab_size_divisible_by = 128
     args.tensor_model_parallel_size = 1
     args.vocab_extra_ids = 0
 
     return args
 
+
+def get_file_name(args, file_id):
+    file_name, extension = os.path.splitext(args.input)
+    input_file_name = file_name + "_" + str(file_id) + extension
+    sentence_split_file = file_name + "_ss_" + str(file_id) + extension
+    output_prefix = args.output_prefix + "_" + str(file_id)
+    file_names = {
+        'partition': input_file_name,
+        'sentence_split': sentence_split_file,
+        'output_prefix': output_prefix}
+    return file_names
+
+
+def check_files_exist(in_ss_out_names, key, num_partitions):
+    for i in range(num_partitions):
+        if not os.path.exists(in_ss_out_names[i][key]):
+            return False
+    return True
+
+
 def main():
     args = get_args()
-    startup_start = time.time()
 
-    print("Opening", args.input)
-    fin = open(args.input, 'r', encoding='utf-8')
-
-    if nltk_available and args.split_sentences:
+    if args.split_sentences:
+        if nltk_available:
             nltk.download("punkt", quiet=True)
+        else:
+            raise Exception(
+                "nltk library required for sentence splitting is not available.")
 
-    encoder = Encoder(args)
-    tokenizer = build_tokenizer(args)
-    pool = multiprocessing.Pool(args.workers, initializer=encoder.initializer)
-    encoded_docs = pool.imap(encoder.encode, fin, args.chunk_size)
-    #encoded_docs = map(encoder.encode, fin)
+    in_ss_out_names = []
+    if args.partitions == 1:
+        file_name, extension = os.path.splitext(args.input)
+        sentence_split_file = file_name + "_ss" + extension
+        file_names = {
+            'partition': args.input,
+            'sentence_split': sentence_split_file,
+            'output_prefix': args.output_prefix}
+        in_ss_out_names.append(file_names)
+    else:
+        in_file_names = glob.glob(args.input)
+
+        # Count total number of lines across .jsonl files
+        if args.keep_sequential_samples:
+            total_sample_count = 0
+            for filename in in_file_names:
+                with open(filename, "r") as fin:
+                    for fc, _ in enumerate(fin):
+                        pass
+                total_sample_count += (fc + 1)
+            partition_size = math.ceil(total_sample_count / args.partitions)
+
+        # create .jsonl parition files
+        for idx in range(args.partitions):
+            in_ss_out_name = get_file_name(args, idx)
+            in_ss_out_names.append(in_ss_out_name)
+
+        # check to see if paritions were already created
+        partitions_present = check_files_exist(in_ss_out_names, 'partition', args.partitions)
+
+        # check to see if paritions with split sentences already created
+        split_sentences_present = check_files_exist(in_ss_out_names, 'sentence_split', args.partitions)
+
+        if not partitions_present and not split_sentences_present:
+            # populate .jsonl partition files from parent files
+            partitioned_input_files = []
+            for idx in range(args.partitions):
+                partitioned_input_file = open(in_ss_out_names[idx]['partition'], 'w')
+                partitioned_input_files.append(partitioned_input_file)
+
+            index = 0
+            if args.keep_sequential_samples: line_count = 0
+            for in_file_name in in_file_names:
+                # support for gzip files
+                if in_file_name.endswith(".gz"):
+                    fin = gzip.open(in_file_name, 'rt')
+                else:
+                    fin = open(in_file_name, 'r', encoding='utf-8')
+
+                for line in fin:
+                    partitioned_input_files[index].write(line)
+                    if args.keep_sequential_samples:
+                        line_count += 1
+                        if line_count % partition_size == 0:
+                            index += 1
+                    else:
+                        index = (index + 1)%args.partitions
+
+                fin.close()
+
+            for idx in range(args.partitions):
+                partitioned_input_files[idx].close()
+
+    assert args.workers % args.partitions == 0
+    partition = Partition(args, args.workers//args.partitions)
+
+    # check to see if paritions with split sentences already created
+    split_sentences_present = check_files_exist(in_ss_out_names, 'sentence_split', args.partitions)
 
+    # split sentences in partition files
+    if args.split_sentences and not split_sentences_present:
+        processes = []
+        for name in in_ss_out_names:
+            p = multiprocessing.Process(target=partition.split_sentences,
+                                        args=((name['partition'], name['sentence_split']),))
+            p.start()
+            processes.append(p)
+
+        for p in processes:
+            p.join()
+
+        if args.partitions == 1:
+            return
+
+
+    # encode partition files in parallel
+    processes = []
+    input_key = 'sentence_split' if args.split_sentences else 'partition'
+    for name in in_ss_out_names:
+        p = multiprocessing.Process(target=partition.process_json_file,
+                                    args=((name[input_key], name['output_prefix']),))
+        p.start()
+        processes.append(p)
+
+    for p in processes:
+        p.join()
+
+    if args.partitions == 1:
+        return
+
+    # merge bin/idx partitions
     level = "document"
     if args.split_sentences:
         level = "sentence"
 
-    print(f"Vocab size: {tokenizer.vocab_size}")
-    print(f"Output prefix: {args.output_prefix}")
     output_bin_files = {}
     output_idx_files = {}
     builders = {}
+    tokenizer = build_tokenizer(args)
+
     for key in args.json_keys:
         output_bin_files[key] = "{}_{}_{}.bin".format(args.output_prefix,
                                                       key, level)
@@ -169,31 +388,15 @@ def main():
         builders[key] = indexed_dataset.make_builder(output_bin_files[key],
                                                      impl=args.dataset_impl,
                                                      vocab_size=tokenizer.vocab_size)
-
-    startup_end = time.time()
-    proc_start = time.time()
-    total_bytes_processed = 0
-    print("Time to startup:", startup_end - startup_start)
-
-    for i, (doc, bytes_processed) in enumerate(encoded_docs, start=1):
-        total_bytes_processed += bytes_processed
-        for key, sentences in doc.items():
-            if len(sentences) == 0:
-                continue
-            for sentence in sentences:
-                builders[key].add_item(torch.IntTensor(sentence))
-            builders[key].end_document()
-        if i % args.log_interval == 0:
-            current = time.time()
-            elapsed = current - proc_start
-            mbs = total_bytes_processed/elapsed/1024/1024
-            print(f"Processed {i} documents",
-                  f"({i/elapsed} docs/s, {mbs} MB/s).",
-                  file=sys.stderr)
-    print("Done! Now finalizing.")
-
-    for key in args.json_keys:
+        for name in in_ss_out_names:
+            parition_output_prefix = name['output_prefix']
+            full_partition_output_prefix = "{}_{}_{}".format(parition_output_prefix,
+                                                             key, level)
+            builders[key].merge_file_(full_partition_output_prefix)
         builders[key].finalize(output_idx_files[key])
 
+
 if __name__ == '__main__':
+
     main()
+

tools/preprocess_data_partitions.py

-# Copyright (c) 2022, NVIDIA CORPORATION. All rights reserved.
-
-"""Processing large data for pretraining."""
-import argparse
-import math
-import json
-import os
-import sys
-sys.path.append(os.path.abspath(os.path.join(os.path.dirname(__file__),
-                                             os.path.pardir)))
-import time
-import gzip
-import glob
-import torch
-import numpy as np
-import multiprocessing
-try:
-    import nltk
-    nltk_available = True
-except ImportError:
-    nltk_available = False
-
-from megatron.tokenizer import build_tokenizer
-from megatron.data import indexed_dataset
-
-
-# https://stackoverflow.com/questions/33139531/preserve-empty-lines-with-nltks-punkt-tokenizer
-class CustomLanguageVars(nltk.tokenize.punkt.PunktLanguageVars):
-
-    _period_context_fmt = r"""
-        \S*                          # some word material
-        %(SentEndChars)s             # a potential sentence ending
-        \s*                       #  <-- THIS is what I changed
-        (?=(?P<after_tok>
-            %(NonWord)s              # either other punctuation
-            |
-            (?P<next_tok>\S+)     #  <-- Normally you would have \s+ here
-        ))"""
-
-class IdentitySplitter(object):
-    def tokenize(self, *text):
-        return text
-
-
-class Encoder(object):
-    def __init__(self, args):
-        self.args = args
-
-    def initializer(self):
-        # Use Encoder class as a container for global data
-        Encoder.tokenizer = build_tokenizer(self.args)
-        if self.args.split_sentences:
-            if not nltk_available:
-                print("NLTK is not available to split sentences.")
-                exit()
-            library = "tokenizers/punkt/{}.pickle".format(self.args.lang)
-            splitter = nltk.load(library)
-            if self.args.keep_newlines:
-                # this prevents punkt from eating newlines after sentences
-                Encoder.splitter = nltk.tokenize.punkt.PunktSentenceTokenizer(
-                    train_text = splitter._params,
-                    lang_vars = CustomLanguageVars())
-            else:
-                Encoder.splitter = splitter
-
-        else:
-            Encoder.splitter = IdentitySplitter()
-
-    def split(self, json_line):
-        data = json.loads(json_line)
-        output = {}
-        for key in self.args.json_keys:
-            text = data[key]
-            max_len = 1000000
-            tokens_list = [Encoder.splitter.tokenize(text[i:i+max_len]) for i in range(0, len(text), max_len)]
-            output[key] = [tokens for partial in tokens_list for tokens in partial]
-        return json.dumps(output), len(json_line)
-
-    def encode(self, json_line):
-        data = json.loads(json_line)
-        ids = {}
-        lens = {}
-        for key in self.args.json_keys:
-            text = data[key]
-            if isinstance(text, list):
-                sentences = text
-            else:
-                sentences = [text]
-            doc_ids = []
-            sentence_lens = []
-            for sentence in sentences:
-                sentence_ids = Encoder.tokenizer.tokenize(sentence)
-                if len(sentence_ids) > 0:
-                    doc_ids.extend(sentence_ids)
-                    sentence_lens.append(len(sentence_ids))
-            if len(doc_ids) > 0 and self.args.append_eod:
-                doc_ids.append(Encoder.tokenizer.eod)
-            ids[key] = doc_ids
-            lens[key] = sentence_lens
-        return ids, lens, len(json_line)
-
-
-class Partition(object):
-    def __init__(self, args, workers):
-        self.args = args
-        self.workers = workers
-
-    def print_processing_stats(self, count, proc_start, total_bytes_processed):
-        if count % self.args.log_interval == 0:
-            current = time.time()
-            elapsed = current - proc_start
-            mbs = total_bytes_processed/elapsed/1024/1024
-            print(f"Processed {count} documents",
-                  f"({count/elapsed} docs/s, {mbs} MB/s).",
-                  file=sys.stderr)
-
-    def split_sentences(self, file_name):
-        input_file_name, output_file_name = file_name
-        print("Opening", input_file_name)
-        fin = open(input_file_name, 'r', encoding='utf-8')
-        fout = open(output_file_name, 'w')
-
-        encoder = Encoder(self.args)
-        pool = multiprocessing.Pool(self.workers, initializer=encoder.initializer)
-        split_docs = pool.imap(encoder.split, fin, 32)
-
-        proc_start = time.time()
-        total_bytes_processed = 0
-        for i, (doc, bytes_processed) in enumerate(split_docs, start=1):
-            total_bytes_processed += bytes_processed
-            fout.write(doc + "\n")
-            self.print_processing_stats(i, proc_start, total_bytes_processed)
-
-        fin.close()
-        fout.close()
-
-
-    def process_json_file(self, file_name):
-        input_file_name, output_prefix = file_name
-        print("Opening", input_file_name)
-        fin = open(input_file_name, 'r', encoding='utf-8')
-
-        startup_start = time.time()
-        encoder = Encoder(self.args)
-        tokenizer = build_tokenizer(self.args)
-        pool = multiprocessing.Pool(self.workers, initializer=encoder.initializer)
-        encoded_docs = pool.imap(encoder.encode, fin, 32)
-
-        level = "document"
-        if self.args.split_sentences:
-            level = "sentence"
-
-        output_bin_files = {}
-        output_idx_files = {}
-        builders = {}
-
-        for key in self.args.json_keys:
-            output_bin_files[key] = "{}_{}_{}.bin".format(output_prefix,
-                                                          key, level)
-            output_idx_files[key] = "{}_{}_{}.idx".format(output_prefix,
-                                                          key, level)
-            builders[key] = indexed_dataset.make_builder(output_bin_files[key],
-                                                   impl=self.args.dataset_impl,
-                                                   vocab_size=tokenizer.vocab_size)
-
-        startup_end = time.time()
-        proc_start = time.time()
-        total_bytes_processed = 0
-        print("Time to startup:", startup_end - startup_start)
-        for i, (doc, sentence_lens, bytes_processed) in enumerate(encoded_docs, start=1):
-            total_bytes_processed += bytes_processed
-            for key in doc.keys():
-                builders[key].add_doc(doc[key], sentence_lens[key])
-            self.print_processing_stats(i, proc_start, total_bytes_processed)
-        
-        fin.close()
-        builders[key].finalize(output_idx_files[key])
-
-
-def get_args():
-    parser = argparse.ArgumentParser()
-    group = parser.add_argument_group(title='input data')
-    group.add_argument('--input', type=str, required=True,
-                       help='Path to input JSON')
-    group.add_argument('--json-keys', nargs='+', default=['text'],
-                       help='space separate listed of keys to extract from json')
-    group.add_argument('--split-sentences', action='store_true',
-                       help='Split documents into sentences.')
-    group.add_argument('--keep-newlines', action='store_true',
-                       help='Keep newlines between sentences when splitting.')
-
-    group = parser.add_argument_group(title='tokenizer')
-    group.add_argument('--tokenizer-type', type=str, required=True,
-                       choices=['BertWordPieceLowerCase','BertWordPieceCase',
-                                'GPT2BPETokenizer', 'SentencePieceTokenizer', 'GPTSentencePieceTokenizer'],
-                       help='What type of tokenizer to use.')
-    group.add_argument('--tokenizer-model', type=str, default=None,
-                       help='YTTM tokenizer model.')
-    group.add_argument('--vocab-file', type=str, default=None,
-                       help='Path to the vocab file')
-    group.add_argument('--merge-file', type=str, default=None,
-                       help='Path to the BPE merge file (if necessary).')
-    group.add_argument('--append-eod', action='store_true',
-                       help='Append an <eod> token to the end of a document.')
-    group.add_argument('--lang', type=str, default='english',
-                       help='Language to use for NLTK-powered sentence splitting.')
-    group = parser.add_argument_group(title='output data')
-    group.add_argument('--output-prefix', type=str, required=True,
-                       help='Path to binary output file without suffix')
-    group.add_argument('--dataset-impl', type=str, default='mmap',
-                       choices=['lazy', 'cached', 'mmap'])
-
-    group = parser.add_argument_group(title='runtime')
-    group.add_argument('--workers', type=int, default=1,
-                       help='Number of worker processes to launch')
-    group.add_argument('--partitions', type=int, default=1,
-                        help='Number of file partitions')
-    group.add_argument('--log-interval', type=int, default=1000,
-                       help='Interval between progress updates')
-    args = parser.parse_args()
-    args.keep_empty = False
-
-    if args.tokenizer_type.lower().startswith('bert') and not args.split_sentences:
-        print("Are you sure you don't want to split sentences?")
-
-    # some default/dummy values for the tokenizer
-    args.rank = 1
-    args.make_vocab_size_divisible_by = 128
-    args.tensor_model_parallel_size = 1
-    args.vocab_extra_ids = 0
-
-    return args
-
-
-def get_file_name(args, file_id):
-    file_name, extension = os.path.splitext(args.input)
-    input_file_name = file_name + "_" + str(file_id) + extension
-    sentence_split_file = file_name + "_ss_" + str(file_id) + extension
-    output_prefix = args.output_prefix + "_" + str(file_id)
-    file_names = {
-        'partition': input_file_name,
-        'sentence_split': sentence_split_file,
-        'output_prefix': output_prefix}
-    return file_names
-
-
-def check_files_exist(in_ss_out_names, key, num_partitions):
-    for i in range(num_partitions):
-        if not os.path.exists(in_ss_out_names[i][key]):
-            return False
-    return True
-
-
-def main():
-    args = get_args()
-
-    if args.split_sentences:
-        if nltk_available:
-            nltk.download("punkt", quiet=True)
-        else:
-            raise Exception(
-                "nltk library required for sentence splitting is not available.")
-
-    in_ss_out_names = []
-    if args.partitions == 1:
-        file_name, extension = os.path.splitext(args.input)
-        sentence_split_file = file_name + "_ss" + extension
-        file_names = {
-            'partition': args.input,
-            'sentence_split': sentence_split_file,
-            'output_prefix': args.output_prefix}
-        in_ss_out_names.append(file_names)
-    else:
-        in_file_names = glob.glob(args.input)
-
-        # create .jsonl parition files
-        for idx in range(args.partitions):
-            in_ss_out_name = get_file_name(args, idx)
-            in_ss_out_names.append(in_ss_out_name)
-
-        # check to see if paritions were already created
-        partitions_present = check_files_exist(in_ss_out_names, 'partition', args.partitions)
-
-        # check to see if paritions with split sentences already created
-        split_sentences_present = check_files_exist(in_ss_out_names, 'sentence_split', args.partitions)
-
-        if not partitions_present and not split_sentences_present:
-            # populate .jsonl partition files from parent files
-            partitioned_input_files = []
-            for idx in range(args.partitions):
-                partitioned_input_file = open(in_ss_out_names[idx]['partition'], 'w')
-                partitioned_input_files.append(partitioned_input_file)
-
-            index = 0
-            for in_file_name in in_file_names:
-                # support for gzip files
-                if in_file_name.endswith(".gz"):
-                    fin = gzip.open(in_file_name, 'rt')
-                else:
-                    fin = open(in_file_name, 'r', encoding='utf-8')
-
-                for line in fin:
-                    partitioned_input_files[index].write(line)
-                    index = (index + 1)%args.partitions
-
-                fin.close()
-
-            for idx in range(args.partitions):
-                partitioned_input_files[idx].close()
-
-    assert args.workers % args.partitions == 0
-    partition = Partition(args, args.workers//args.partitions)
-
-    # check to see if paritions with split sentences already created
-    split_sentences_present = check_files_exist(in_ss_out_names, 'sentence_split', args.partitions)
-
-    # split sentences in partition files
-    if args.split_sentences and not split_sentences_present:
-        processes = []
-        for name in in_ss_out_names:
-            p = multiprocessing.Process(target=partition.split_sentences,
-                                        args=((name['partition'], name['sentence_split']),))
-            p.start()
-            processes.append(p)
-
-        for p in processes:
-            p.join()
-
-        if args.partitions == 1:
-            return
-
-
-    # encode partition files in parallel
-    processes = []
-    input_key = 'sentence_split' if args.split_sentences else 'partition'
-    for name in in_ss_out_names:
-        p = multiprocessing.Process(target=partition.process_json_file,
-                                    args=((name[input_key], name['output_prefix']),))
-        p.start()
-        processes.append(p)
-
-    for p in processes:
-        p.join()
-
-    # merge bin/idx partitions
-    level = "document"
-    if args.split_sentences:
-        level = "sentence"
-
-    output_bin_files = {}
-    output_idx_files = {}
-    builders = {}
-    tokenizer = build_tokenizer(args)
-
-    for key in args.json_keys:
-        output_bin_files[key] = "{}_{}_{}.bin".format(args.output_prefix,
-                                                      key, level)
-        output_idx_files[key] = "{}_{}_{}.idx".format(args.output_prefix,
-                                                      key, level)
-        builders[key] = indexed_dataset.make_builder(output_bin_files[key],
-                                                     impl=args.dataset_impl,
-                                                     vocab_size=tokenizer.vocab_size)
-        for name in in_ss_out_names:
-            parition_output_prefix = name['output_prefix']
-            full_partition_output_prefix = "{}_{}_{}".format(parition_output_prefix,
-                                                             key, level)
-            builders[key].merge_file_(full_partition_output_prefix)
-        builders[key].finalize(output_idx_files[key])
-
-
-if __name__ == '__main__':
-    main()
-

tools/preprocess_mmdata.py

+# coding=utf-8
+# Copyright (c) 2023, NVIDIA CORPORATION.  All rights reserved.
+
+"""Processing text modality data for MultiModal pretraining."""
+
+import argparse
+import json
+import multiprocessing
+import os
+import sys
+import numpy as np
+from torchvision.transforms import ToTensor
+sys.path.append(os.path.abspath(os.path.join(os.path.dirname(__file__),
+                                             os.path.pardir)))
+import time
+
+import torch
+try:
+    import nltk
+    nltk_available = True
+except ImportError:
+    nltk_available = False
+
+from megatron.tokenizer import build_tokenizer
+from megatron.data import indexed_dataset
+from megatron.data.indexed_dataset import MMapIndexedDatasetBuilder
+
+
+# https://stackoverflow.com/questions/33139531/preserve-empty-lines-with-nltks-punkt-tokenizer
+class CustomLanguageVars(nltk.tokenize.punkt.PunktLanguageVars):
+
+    _period_context_fmt = r"""
+        \S*                          # some word material
+        %(SentEndChars)s             # a potential sentence ending
+        \s*                       #  <-- THIS is what I changed
+        (?=(?P<after_tok>
+            %(NonWord)s              # either other punctuation
+            |
+            (?P<next_tok>\S+)     #  <-- Normally you would have \s+ here
+        ))"""
+
+class IdentitySplitter(object):
+    def tokenize(self, *text):
+        return text
+
+class Encoder(object):
+    def __init__(self, args):
+        self.args = args
+
+    def initializer(self):
+        # Use Encoder class as a container for global data
+        Encoder.tokenizer = build_tokenizer(self.args)
+
+    def encode(self, input_pair):
+        json_line, img_file = input_pair
+        data = json.loads(json_line)
+        key = "text"
+        text = data[key]
+        sentence_ids = Encoder.tokenizer.tokenize(text)
+        pad_len = self.args.pad_length
+        if len(sentence_ids) > 0 and self.args.append_eod:
+            sentence_ids = sentence_ids[:pad_len]
+            current_length = len(sentence_ids)
+            sentence_ids.extend([Encoder.tokenizer.eod for _ in range(max(0,pad_len-current_length))])
+
+        with open(img_file[:-1], "rb") as tf:
+            xs = bytearray(tf.read())
+            img_pad = (4 - len(xs) % 4) % 4
+            xs.extend([0 for _ in range(img_pad)])
+            img_raw = np.frombuffer(xs, dtype=np.int32)
+            img_raw = np.insert(img_raw, 0, img_pad)
+        
+        return sentence_ids, img_raw, len(json_line)
+
+def get_args():
+    parser = argparse.ArgumentParser()
+    group = parser.add_argument_group(title='input data')
+    group.add_argument('--input', type=str, required=True,
+                       help='Path to input JSON')
+    group.add_argument('--input-image', type=str, required=True,
+                       help='Path to input image folder')
+
+    group.add_argument('--pad-length', type=int, required=True,
+                       help='Pad length of preprocessed text')
+
+    group.add_argument('--split-sentences', action='store_true',
+                       help='Split documents into sentences.')
+    group.add_argument('--keep-newlines', action='store_true',
+                       help='Keep newlines between sentences when splitting.')
+
+    group = parser.add_argument_group(title='tokenizer')
+    group.add_argument('--tokenizer-type', type=str, required=True,
+                       choices=['BertWordPieceLowerCase','BertWordPieceCase',
+                                'GPT2BPETokenizer', 'SentencePieceTokenizer', 'GPTSentencePieceTokenizer'],
+                       help='What type of tokenizer to use.')
+    group.add_argument('--vocab-file', type=str, default=None,
+                       help='Path to the vocab file')
+    group.add_argument('--merge-file', type=str, default=None,
+                       help='Path to the BPE merge file (if necessary).')
+    group.add_argument('--append-eod', action='store_true',
+                       help='Append an <eod> token to the end of a document.')
+    group.add_argument('--lang', type=str, default='english',
+                       help='Language to use for NLTK-powered sentence splitting.')
+    group.add_argument('--tokenizer-model', type=str, default=None,
+                       help='sentencepeice tokenizer model.')
+
+    group = parser.add_argument_group(title='output data')
+    group.add_argument('--output-prefix', type=str, required=True,
+                       help='Path to binary output file without suffix')
+    group = parser.add_argument_group(title='runtime')
+    group.add_argument('--workers', type=int, default=1,
+                       help='Number of worker processes to launch')
+    group.add_argument('--log-interval', type=int, default=100,
+                       help='Interval between progress updates')
+    args = parser.parse_args()
+    args.keep_empty = False
+
+    # some default/dummy values for the tokenizer
+    args.rank = 0
+    args.make_vocab_size_divisible_by = 128
+    args.tensor_model_parallel_size = 1
+    args.vocab_extra_ids = 0
+
+    return args
+
+def main():
+    args = get_args()
+    startup_start = time.time()
+
+    encoder = Encoder(args)
+    tokenizer = build_tokenizer(args)
+    pool = multiprocessing.Pool(args.workers, initializer=encoder.initializer)
+
+    fin = open(args.input + ".json", 'r', encoding='utf-8')
+    img_files = open(args.input_image)
+
+    encoded_docs = pool.imap(encoder.encode, zip(fin, img_files), 25)
+
+    print(f"Vocab size: {tokenizer.vocab_size}")
+    print(f"Output prefix: {args.output_prefix}")
+    
+    output_bin_files = "{}_mmdata.bin".format(args.output_prefix)
+    output_idx_files = "{}_mmdata.idx".format(args.output_prefix)
+
+    builders = MMapIndexedDatasetBuilder(output_bin_files, dtype=np.int32, multimodal=True)
+
+    startup_end = time.time()
+    proc_start = time.time()
+    total_bytes_processed = 0
+
+    print("Time to startup:", startup_end - startup_start)
+    
+    for i, (sentence, img_raw, bytes_processed) in enumerate(encoded_docs, start=1):
+        total_bytes_processed += bytes_processed
+        builders.add_item(torch.IntTensor(sentence))
+        builders.add_item(torch.from_numpy(img_raw), 1)
+        builders.end_document()
+        if i % args.log_interval == 0:
+            current = time.time()
+            elapsed = current - proc_start
+            mbs = total_bytes_processed/elapsed/1024/1024
+            print(f"Processed {i} documents",
+                  f"({i/elapsed} docs/s, {mbs} MB/s).",
+                  file=sys.stderr)
+    
+    builders.finalize(output_idx_files)
+
+
+if __name__ == '__main__':
+    main()
+

tools/retro/README.md

@@ -18,13 +18,11 @@ The following overview goes into more detail on the pipeline, code structure, us
 <!-- ################ quick start ################ -->
 # Quick start
 
-See `examples/get_preprocess_cmd.sh` for example arguments.
-
 Key files:
 
-- `main.py` : Entry point.
-- `examples/get_preprocess_cmd.sh` : Build preprocessing command (for `main.py`).
-- `examples/preprocess_data.sh` : Run preprocessing (calls `get_preprocess_cmd.sh`, `main.py`).
+- `main.py` : Entry point for processing.
+- `examples/preprocess_data.sh` : Example preprocessing launch (calls `main.py`).
+- `examples/pretrain_data.sh` : Example pretraining launch (calls `pretrain_retro.py`).
 
 Use `--retro-tasks` to move through the preprocessing pipeline.
 
@@ -86,9 +84,8 @@ Multiple tasks can be specified by separating with commas (e.g., `--retro-tasks
 
 Example scripts for setting arguments and launch Retro preprocessing. The key files here are:
 
-- **`get_preprocess_cmd.sh`** : Sets up arguments and command for preprocessing. **Important note**: this script assumes a few environment variables are already set before it is called. Please see the `Environment vars.` section at the top of this file. Generally, environment variables must be set to determine the location of Retro workdirs, input datasets, and GPT and Bert model information.
-- **`preprocess_data.sh`** : Calls `get_preprocess_cmd.sh` to get arguments, and then calls `main.py` to launch preprocessing.
-- **`pretrain_model.sh`** : Example script for pretraining on Wikipedia data, after preprocessing is complete.
+- **`preprocess_data.sh`** : Example launch script for preprocessing retro data.
+- **`pretrain_model.sh`** : Example launch script for pretraining a retro model.
 
 ### `tools/retro/db`
 

tools/retro/cli/__init__.py

 # Copyright (c) 2023, NVIDIA CORPORATION.  All rights reserved.
 
-import json
-import numpy as np
-import os
-import torch
-import types
-
-from megatron.global_vars import set_global_variables, set_retro_args
-from megatron.initialize import (
-    initialize_megatron,
-    _initialize_distributed,
-    _set_random_seed,
-)
-from tools.retro.db.utils import (
-    get_indexed_dataset_infos as get_db_indexed_dataset_infos,
-    get_merged_train_dataset as get_db_dataset,
-)
-from tools.retro.external_libs import h5py
-from tools.retro.main import add_retro_args
-from tools.retro.pretraining.retro_dataset import get_retro_datasets
-from tools.retro.utils import get_args_path, get_bert_tokenizer, get_gpt_tokenizer
-
-
-def shorten_str(s, n):
-    s = "\\n".join(s.splitlines())
-    return s if len(s) <= n else "%s ... %s" % (s[:n//2], s[-n//2:])
-
-
-class retro:
-
-    args = None
-
-    ##############################################
-    # initialize.
-    ##############################################
-
-    @classmethod
-    def init_megatron(cls, workdir):
-        '''Custom initialization of Megatron.'''
-
-        # Load args.
-        args_path = get_args_path(workdir)
-        assert os.path.exists(args_path), "args.json not found in workdir."
-        with open(args_path) as f:
-            cls.args = types.SimpleNamespace(**json.load(f))
-            cls.args.retro_workdir = workdir # just in case workdir moved
-            cls.args.rank = 0 # override env
-            cls.args.world_size = 1 # override env
-
-        set_global_variables(cls.args)
-        set_retro_args(cls.args)
-        _initialize_distributed()
-        _set_random_seed(cls.args.seed, cls.args.data_parallel_random_init)
-
-    @classmethod
-    def init(cls, workdir):
-        '''Initialize Megatron, tokenizers, and datasets.'''
-
-        # Load args.
-        cls.init_megatron(workdir)
-
-        cls.tokenizers = types.SimpleNamespace(
-            gpt=get_gpt_tokenizer(),
-            bert=get_bert_tokenizer(),
-        )
-
-        # Load data.
-        cls.db_indexed_dataset_infos = get_db_indexed_dataset_infos()
-        pt_train_ds, pt_valid_ds, _ = get_retro_datasets()
-        cls.pt_datasets = types.SimpleNamespace(
-            train=pt_train_ds,
-            valid=pt_valid_ds,
-        )
-
-        # Print usage.
-        cls.print_usage()
-
-    ##############################################
-    # utils.
-    ##############################################
-
-    @classmethod
-    def gpt_to_text(cls, token_ids):
-        '''GPT tokens to text.'''
-        return cls.tokenizers.gpt.detokenize(token_ids)
-
-    @classmethod
-    def text_to_bert(cls, text):
-        '''Text to Bert tokens.'''
-        return cls.tokenizers.bert.tokenize(text)
-
-    ##############################################
-    # chunk db.
-    ##############################################
-
-    @classmethod
-    def get_db_num_indexed_datasets(cls):
-        '''Number of indexed datasets within blendable dataset.'''
-        return len(cls.db_indexed_dataset_infos)
-
-    @classmethod
-    def get_db_indexed_dataset_infos(cls):
-        '''Dataset infos, including number of training & sampled sets.'''
-        return [(info["ratio"], info["name"])
-                for info in cls.db_indexed_dataset_infos]
-
-    @classmethod
-    def get_db_dataset(cls):
-        return cls.pt_datasets.train.db_dataset
-
-    @classmethod
-    def get_db_num_chunks(cls):
-        '''Number of DB chunks.'''
-        return len(cls.get_db_dataset())
-
-    @classmethod
-    def get_db_chunk_gpt(cls, idx):
-        '''Get DB chunk as GPT token ids.'''
-        return cls.get_db_dataset()[idx]["text"].tolist()
-
-    @classmethod
-    def get_db_chunk_bert(cls, idx):
-        '''Get DB chunk as Bert token ids.'''
-        return cls.text_to_bert(cls.get_db_chunk_text(idx))
-
-    @classmethod
-    def get_db_chunk_text(cls, idx):
-        '''Get DB chunk as text.'''
-        return cls.gpt_to_text(cls.get_db_chunk_gpt(idx))
-
-    @classmethod
-    def get_db_chunk_and_continuation_text(cls, idx):
-        '''Get DB chunk along with continuation, as text.'''
-
-        # Modulus used here to match original implementation (i.e., last
-        # chunks continuation wraps around to first chunk).
-        return [
-            cls.get_db_chunk_text(idx),
-            cls.get_db_chunk_text((idx + 1) % len(cls.get_db_dataset())),
-        ]
-
-    ##############################################
-    # pretraining corpus.
-    ##############################################
-
-    @classmethod
-    def get_pt_num_samples_and_chunks(cls, data_key):
-        '''Number of samples & chunks (e.g., 32*n_samples) in corpus.'''
-        assert hasattr(cls.pt_datasets, data_key), \
-            "pretraining set '%s' not found (choices: %s)." % (
-                data_key, ", ".join(vars(cls.pt_datasets).keys()))
-        chunk_dataset = getattr(cls.pt_datasets, data_key).chunk_dataset
-        return (
-            len(chunk_dataset.sample_dataset),
-            len(chunk_dataset),
-        )
-
-    @classmethod
-    def get_pt_num_samples(cls, data_key):
-        '''Number of pretraining samples.'''
-        return cls.get_pt_num_samples_and_chunks(data_key)[0]
-
-    @classmethod
-    def get_pt_num_chunks(cls, data_key):
-        '''Number of pretraining chunks (e.g., 32*n_samples).'''
-        return cls.get_pt_num_samples_and_chunks(data_key)[1]
-
-    @classmethod
-    def get_pt_sample(cls, data_key, idx):
-        return getattr(cls.pt_datasets, data_key)[idx]
-
-    ##############################################
-    # usage.
-    ##############################################
-
-    @classmethod
-    def print_usage(cls):
-        '''Print usage.'''
-
-        print()
-        print("+++++++++++++++++++++++++++++++++++++++++++++++++++")
-        print("examples ... [ *note*: 'db' = chunk db; 'pt' = pretraining corpus. ]")
-        print("+++++++++++++++++++++++++++++++++++++++++++++++++++")
-
-        print()
-        print("~~~~ indexed datasets ~~~~")
-        print("retro.get_db_num_indexed_datasets() : %s" %
-              cls.get_db_num_indexed_datasets())
-        print("retro.get_db_indexed_dataset_infos() :")
-        for i, (ratio,prefix) in enumerate(cls.get_db_indexed_dataset_infos()):
-            print("  %s(%f, %s)%s" % (
-                "[" if i == 0 else " ",
-                ratio,
-                prefix,
-                "]" if i == len(cls.db_indexed_dataset_infos) - 1 else ",",
-            ))
-
-        print()
-        print("~~~~ counts ~~~~")
-        print("retro.get_db_num_chunks : %d." % cls.get_db_num_chunks())
-
-        print()
-        for sq_key in ("sample", "chunk"):
-            for data_key in ("train", "valid"): # test?
-                print("retro.get_pt_num_%ss('%s') : %d." % (
-                    sq_key, data_key,
-                    getattr(cls, f"get_pt_num_{sq_key}s")(data_key)))
-
-        print()
-        print("~~~~ tokens, text ~~~~")
-        print("retro.get_db_chunk_gpt(chunk_id) : %s" %
-              shorten_str(str(retro.get_db_chunk_gpt(0)), 50))
-        print("retro.get_db_chunk_bert(chunk_id) : %s" %
-              shorten_str(str(retro.get_db_chunk_bert(0)), 50))
-        print("retro.get_db_chunk_text(chunk_id) : %s" %
-              shorten_str(retro.get_db_chunk_text(0).strip(), 50))
-        print("retro.get_db_chunk_and_continuation_text(chunk_id) :")
-        for i, t in enumerate(retro.get_db_chunk_and_continuation_text(0)):
-            print("  %s'%s'%s" % (
-                "[" if i == 0 else " ",
-                shorten_str(t.strip().replace("\n", " "), 50),
-                "]" if i == 1 else ",",
-            ))
-
-        sample = cls.get_pt_sample("train", 0)
-        print()
-        print("retro.get_pt_sample('train', sample_id) :")
-        print("  {")
-        for k, v in sample.items():
-            print("    '%s' : %s" % (k, shorten_str(str(v), 50)))
-        print("  }")
-
-        print()
-        print("(e.g., sample = retro.get_pt_sample(...))")
-        print()
-        print("  sample['text'].shape : %s" % str(sample["text"].shape))
-        print("  sample['neighbor_tokens'].shape : %s" % str(sample["neighbor_tokens"].shape))
-        print("  sample['text'] : %s" % shorten_str(str(sample["text"]), 50))
-        print("  sample['neighbor_tokens'][17][1] : %s" % shorten_str(str(sample["neighbor_tokens"][17][1]), 50))
-        print("  retro.gpt_to_text(sample['text']) : %s" % shorten_str(cls.gpt_to_text(sample["text"]), 50))
-        print("  retro.gpt_to_text(sample['neighbor_tokens']) : %s" % shorten_str(cls.gpt_to_text(sample["neighbor_tokens"][17][1]), 50))
-
-        print("+++++++++++++++++++++++++++++++++++++++++++++++++++")
+from .cli import retro