Merge pull request #14 from hpcaitech/inference_pipeline

add inference pipeline from openfold/alphafold

Merge pull request #14 from hpcaitech/inference_pipeline
add inference pipeline from openfold/alphafold
eecadd36 · shenggan · GitHub · b3b3b445 · 42427a1c · eecadd36
Unverified Commit eecadd36 authored Apr 18, 2022 by shenggan Committed by GitHub Apr 18, 2022
20 changed files
--- a/fastfold/model/msa.py
+++ b/fastfold/model/msa.py
--- a/fastfold/model/ops.py
+++ b/fastfold/model/ops.py
--- a/fastfold/model/triangle.py
+++ b/fastfold/model/triangle.py
--- a/fastfold/model/hub/__init__.py
+++ b/fastfold/model/hub/__init__.py
--- a/fastfold/model/hub/alphafold.py
+++ b/fastfold/model/hub/alphafold.py
--- a/fastfold/model/loss.py
+++ b/fastfold/model/loss.py
--- a/fastfold/model/nn/__init__.py
+++ b/fastfold/model/nn/__init__.py
--- a/fastfold/model/nn/dropout.py
+++ b/fastfold/model/nn/dropout.py
--- a/fastfold/model/nn/embedders.py
+++ b/fastfold/model/nn/embedders.py
--- a/fastfold/model/nn/evoformer.py
+++ b/fastfold/model/nn/evoformer.py
--- a/fastfold/model/nn/heads.py
+++ b/fastfold/model/nn/heads.py
--- a/fastfold/model/nn/msa.py
+++ b/fastfold/model/nn/msa.py
--- a/fastfold/model/nn/outer_product_mean.py
+++ b/fastfold/model/nn/outer_product_mean.py
--- a/fastfold/model/nn/pair_transition.py
+++ b/fastfold/model/nn/pair_transition.py
--- a/fastfold/model/nn/primitives.py
+++ b/fastfold/model/nn/primitives.py
--- a/fastfold/model/nn/structure_module.py
+++ b/fastfold/model/nn/structure_module.py
--- a/fastfold/model/nn/template.py
+++ b/fastfold/model/nn/template.py
--- a/fastfold/model/nn/triangular_attention.py
+++ b/fastfold/model/nn/triangular_attention.py
--- a/fastfold/model/nn/triangular_multiplicative_update.py
+++ b/fastfold/model/nn/triangular_multiplicative_update.py
--- a/fastfold/relax/__init__.py
+++ b/fastfold/relax/__init__.py