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Commits
71735d5d
Unverified
Commit
71735d5d
authored
Feb 09, 2023
by
double-vin
Committed by
GitHub
Feb 09, 2023
Browse files
added relaxation argument (#146)
Co-authored-by:
zhuww
<
zhuww@sugon.com
>
parent
4dc719f7
Changes
1
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1 changed file
with
31 additions
and
26 deletions
+31
-26
inference.py
inference.py
+31
-26
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inference.py
View file @
71735d5d
...
...
@@ -306,6 +306,7 @@ def inference_multimer_model(args):
with
open
(
unrelaxed_output_path
,
'w'
)
as
f
:
f
.
write
(
protein
.
to_pdb
(
unrelaxed_protein
))
if
(
args
.
relaxation
):
amber_relaxer
=
relax
.
AmberRelaxation
(
use_gpu
=
True
,
**
config
.
relax
,
...
...
@@ -445,6 +446,7 @@ def inference_monomer_model(args):
with
open
(
unrelaxed_output_path
,
'w'
)
as
f
:
f
.
write
(
protein
.
to_pdb
(
unrelaxed_protein
))
if
(
args
.
relaxation
):
amber_relaxer
=
relax
.
AmberRelaxation
(
use_gpu
=
True
,
**
config
.
relax
,
...
...
@@ -494,6 +496,9 @@ if __name__ == "__main__":
help
=
"""Path to model parameters. If None, parameters are selected
automatically according to the model name from
./data/params"""
)
parser
.
add_argument
(
"--relaxation"
,
action
=
"store_false"
,
default
=
False
,
)
parser
.
add_argument
(
"--cpus"
,
type
=
int
,
default
=
12
,
...
...
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