add inference pipeline from openfold/alphafold

42427a1c · Shenggan · b3b3b445 · 42427a1c · 42427a1c · 42427a1c
Commit 42427a1c authored Apr 14, 2022 by Shenggan
20 changed files
--- a/fastfold/relax/amber_minimize.py
+++ b/fastfold/relax/amber_minimize.py
--- a/fastfold/relax/cleanup.py
+++ b/fastfold/relax/cleanup.py
--- a/fastfold/relax/relax.py
+++ b/fastfold/relax/relax.py
--- a/fastfold/relax/utils.py
+++ b/fastfold/relax/utils.py
--- a/fastfold/utils/__init__.py
+++ b/fastfold/utils/__init__.py
--- a/fastfold/utils/checkpointing.py
+++ b/fastfold/utils/checkpointing.py
--- a/fastfold/utils/feats.py
+++ b/fastfold/utils/feats.py
--- a/fastfold/utils/import_weights.py
+++ b/fastfold/utils/import_weights.py
--- a/fastfold/utils/inject_openfold.py
+++ b/fastfold/utils/inject_openfold.py
--- a/fastfold/utils/rigid_utils.py
+++ b/fastfold/utils/rigid_utils.py
--- a/fastfold/utils/tensor_utils.py
+++ b/fastfold/utils/tensor_utils.py
--- a/inference.py
+++ b/inference.py
--- a/scripts/download_all_data.sh
+++ b/scripts/download_all_data.sh
--- a/scripts/download_alphafold_params.sh
+++ b/scripts/download_alphafold_params.sh
--- a/scripts/download_bfd.sh
+++ b/scripts/download_bfd.sh
--- a/scripts/download_mgnify.sh
+++ b/scripts/download_mgnify.sh
--- a/scripts/download_pdb70.sh
+++ b/scripts/download_pdb70.sh
--- a/scripts/download_pdb_mmcif.sh
+++ b/scripts/download_pdb_mmcif.sh
--- a/scripts/download_pdb_seqres.sh
+++ b/scripts/download_pdb_seqres.sh
--- a/scripts/download_small_bfd.sh
+++ b/scripts/download_small_bfd.sh