import dgl import numpy as np import backend as F import unittest from test_utils import parametrize_dtype def tree1(idtype): """Generate a tree 0 / \ 1 2 / \ 3 4 Edges are from leaves to root. """ g = dgl.graph(([], [])).astype(idtype).to(F.ctx()) g.add_nodes(5) g.add_edge(3, 1) g.add_edge(4, 1) g.add_edge(1, 0) g.add_edge(2, 0) g.ndata['h'] = F.tensor([0, 1, 2, 3, 4]) g.edata['h'] = F.randn((4, 10)) return g def tree2(idtype): """Generate a tree 1 / \ 4 3 / \ 2 0 Edges are from leaves to root. """ g = dgl.graph(([], [])).astype(idtype).to(F.ctx()) g.add_nodes(5) g.add_edge(2, 4) g.add_edge(0, 4) g.add_edge(4, 1) g.add_edge(3, 1) g.ndata['h'] = F.tensor([0, 1, 2, 3, 4]) g.edata['h'] = F.randn((4, 10)) return g @parametrize_dtype def test_batch_unbatch(idtype): t1 = tree1(idtype) t2 = tree2(idtype) bg = dgl.batch([t1, t2]) assert bg.number_of_nodes() == 10 assert bg.number_of_edges() == 8 assert bg.batch_size == 2 assert F.allclose(bg.batch_num_nodes(), F.tensor([5, 5])) assert F.allclose(bg.batch_num_edges(), F.tensor([4, 4])) tt1, tt2 = dgl.unbatch(bg) assert F.allclose(t1.ndata['h'], tt1.ndata['h']) assert F.allclose(t1.edata['h'], tt1.edata['h']) assert F.allclose(t2.ndata['h'], tt2.ndata['h']) assert F.allclose(t2.edata['h'], tt2.edata['h']) @parametrize_dtype def test_batch_unbatch1(idtype): t1 = tree1(idtype) t2 = tree2(idtype) b1 = dgl.batch([t1, t2]) b2 = dgl.batch([t2, b1]) assert b2.number_of_nodes() == 15 assert b2.number_of_edges() == 12 assert b2.batch_size == 3 assert F.allclose(b2.batch_num_nodes(), F.tensor([5, 5, 5])) assert F.allclose(b2.batch_num_edges(), F.tensor([4, 4, 4])) s1, s2, s3 = dgl.unbatch(b2) assert F.allclose(t2.ndata['h'], s1.ndata['h']) assert F.allclose(t2.edata['h'], s1.edata['h']) assert F.allclose(t1.ndata['h'], s2.ndata['h']) assert F.allclose(t1.edata['h'], s2.edata['h']) assert F.allclose(t2.ndata['h'], s3.ndata['h']) assert F.allclose(t2.edata['h'], s3.edata['h']) @unittest.skipIf(dgl.backend.backend_name == "tensorflow", reason="TF doesn't support inplace update") @parametrize_dtype def test_batch_unbatch_frame(idtype): """Test module of node/edge frames of batched/unbatched DGLGraphs. Also address the bug mentioned in https://github.com/dmlc/dgl/issues/1475. """ t1 = tree1(idtype) t2 = tree2(idtype) N1 = t1.number_of_nodes() E1 = t1.number_of_edges() N2 = t2.number_of_nodes() E2 = t2.number_of_edges() D = 10 t1.ndata['h'] = F.randn((N1, D)) t1.edata['h'] = F.randn((E1, D)) t2.ndata['h'] = F.randn((N2, D)) t2.edata['h'] = F.randn((E2, D)) b1 = dgl.batch([t1, t2]) b2 = dgl.batch([t2]) b1.ndata['h'][:N1] = F.zeros((N1, D)) b1.edata['h'][:E1] = F.zeros((E1, D)) b2.ndata['h'][:N2] = F.zeros((N2, D)) b2.edata['h'][:E2] = F.zeros((E2, D)) assert not F.allclose(t1.ndata['h'], F.zeros((N1, D))) assert not F.allclose(t1.edata['h'], F.zeros((E1, D))) assert not F.allclose(t2.ndata['h'], F.zeros((N2, D))) assert not F.allclose(t2.edata['h'], F.zeros((E2, D))) g1, g2 = dgl.unbatch(b1) _g2, = dgl.unbatch(b2) assert F.allclose(g1.ndata['h'], F.zeros((N1, D))) assert F.allclose(g1.edata['h'], F.zeros((E1, D))) assert F.allclose(g2.ndata['h'], t2.ndata['h']) assert F.allclose(g2.edata['h'], t2.edata['h']) assert F.allclose(_g2.ndata['h'], F.zeros((N2, D))) assert F.allclose(_g2.edata['h'], F.zeros((E2, D))) @parametrize_dtype def test_batch_unbatch2(idtype): # test setting/getting features after batch a = dgl.graph(([], [])).astype(idtype).to(F.ctx()) a.add_nodes(4) a.add_edges(0, [1, 2, 3]) b = dgl.graph(([], [])).astype(idtype).to(F.ctx()) b.add_nodes(3) b.add_edges(0, [1, 2]) c = dgl.batch([a, b]) c.ndata['h'] = F.ones((7, 1)) c.edata['w'] = F.ones((5, 1)) assert F.allclose(c.ndata['h'], F.ones((7, 1))) assert F.allclose(c.edata['w'], F.ones((5, 1))) @parametrize_dtype def test_batch_send_and_recv(idtype): t1 = tree1(idtype) t2 = tree2(idtype) bg = dgl.batch([t1, t2]) _mfunc = lambda edges: {'m' : edges.src['h']} _rfunc = lambda nodes: {'h' : F.sum(nodes.mailbox['m'], 1)} u = [3, 4, 2 + 5, 0 + 5] v = [1, 1, 4 + 5, 4 + 5] bg.send_and_recv((u, v), _mfunc, _rfunc) t1, t2 = dgl.unbatch(bg) assert F.asnumpy(t1.ndata['h'][1]) == 7 assert F.asnumpy(t2.ndata['h'][4]) == 2 @parametrize_dtype def test_batch_propagate(idtype): t1 = tree1(idtype) t2 = tree2(idtype) bg = dgl.batch([t1, t2]) _mfunc = lambda edges: {'m' : edges.src['h']} _rfunc = lambda nodes: {'h' : F.sum(nodes.mailbox['m'], 1)} # get leaves. order = [] # step 1 u = [3, 4, 2 + 5, 0 + 5] v = [1, 1, 4 + 5, 4 + 5] order.append((u, v)) # step 2 u = [1, 2, 4 + 5, 3 + 5] v = [0, 0, 1 + 5, 1 + 5] order.append((u, v)) bg.prop_edges(order, _mfunc, _rfunc) t1, t2 = dgl.unbatch(bg) assert F.asnumpy(t1.ndata['h'][0]) == 9 assert F.asnumpy(t2.ndata['h'][1]) == 5 @parametrize_dtype def test_batched_edge_ordering(idtype): g1 = dgl.graph(([], [])).astype(idtype).to(F.ctx()) g1.add_nodes(6) g1.add_edges([4, 4, 2, 2, 0], [5, 3, 3, 1, 1]) e1 = F.randn((5, 10)) g1.edata['h'] = e1 g2 = dgl.graph(([], [])).astype(idtype).to(F.ctx()) g2.add_nodes(6) g2.add_edges([0, 1 ,2 ,5, 4 ,5], [1, 2, 3, 4, 3, 0]) e2 = F.randn((6, 10)) g2.edata['h'] = e2 g = dgl.batch([g1, g2]) r1 = g.edata['h'][g.edge_id(4, 5)] r2 = g1.edata['h'][g1.edge_id(4, 5)] assert F.array_equal(r1, r2) @parametrize_dtype def test_batch_no_edge(idtype): g1 = dgl.graph(([], [])).astype(idtype).to(F.ctx()) g1.add_nodes(6) g1.add_edges([4, 4, 2, 2, 0], [5, 3, 3, 1, 1]) g2 = dgl.graph(([], [])).astype(idtype).to(F.ctx()) g2.add_nodes(6) g2.add_edges([0, 1, 2, 5, 4, 5], [1 ,2 ,3, 4, 3, 0]) g3 = dgl.graph(([], [])).astype(idtype).to(F.ctx()) g3.add_nodes(1) # no edges g = dgl.batch([g1, g3, g2]) # should not throw an error @parametrize_dtype def test_batch_keeps_empty_data(idtype): g1 = dgl.graph(([], [])).astype(idtype).to(F.ctx()) g1.ndata["nh"] = F.tensor([]) g1.edata["eh"] = F.tensor([]) g2 = dgl.graph(([], [])).astype(idtype).to(F.ctx()) g2.ndata["nh"] = F.tensor([]) g2.edata["eh"] = F.tensor([]) g = dgl.batch([g1, g2]) assert "nh" in g.ndata assert "eh" in g.edata def _get_subgraph_batch_info(keys, induced_indices_arr, batch_num_objs): """Internal function to compute batch information for subgraphs. Parameters ---------- keys : List[str] The node/edge type keys. induced_indices_arr : List[Tensor] The induced node/edge index tensor for all node/edge types. batch_num_objs : Tensor Number of nodes/edges for each graph in the original batch. Returns ------- Mapping[str, Tensor] A dictionary mapping all node/edge type keys to the ``batch_num_objs`` array of corresponding graph. """ bucket_offset = np.expand_dims(np.cumsum(F.asnumpy(batch_num_objs), 0), -1) # (num_bkts, 1) ret = {} for key, induced_indices in zip(keys, induced_indices_arr): # NOTE(Zihao): this implementation is not efficient and we can replace it with # binary search in the future. induced_indices = np.expand_dims(F.asnumpy(induced_indices), 0) # (1, num_nodes) new_offset = np.sum((induced_indices < bucket_offset), 1) # (num_bkts,) # start_offset = [0] + [new_offset[i-1] for i in range(1, n_bkts)] start_offset = np.concatenate([np.zeros((1,)), new_offset[:-1]], 0) new_batch_num_objs = new_offset - start_offset ret[key] = F.tensor(new_batch_num_objs, dtype=F.dtype(batch_num_objs)) return ret @parametrize_dtype def test_set_batch_info(idtype): ctx = F.ctx() g1 = dgl.rand_graph(30, 100).astype(idtype).to(F.ctx()) g2 = dgl.rand_graph(40, 200).astype(idtype).to(F.ctx()) bg = dgl.batch([g1, g2]) batch_num_nodes = F.astype(bg.batch_num_nodes(), idtype) batch_num_edges = F.astype(bg.batch_num_edges(), idtype) # test homogeneous node subgraph sg_n = dgl.node_subgraph(bg, list(range(10, 20)) + list(range(50, 60))) induced_nodes = sg_n.ndata['_ID'] induced_edges = sg_n.edata['_ID'] new_batch_num_nodes = _get_subgraph_batch_info(bg.ntypes, [induced_nodes], batch_num_nodes) new_batch_num_edges = _get_subgraph_batch_info(bg.canonical_etypes, [induced_edges], batch_num_edges) sg_n.set_batch_num_nodes(new_batch_num_nodes) sg_n.set_batch_num_edges(new_batch_num_edges) subg_n1, subg_n2 = dgl.unbatch(sg_n) subg1 = dgl.node_subgraph(g1, list(range(10, 20))) subg2 = dgl.node_subgraph(g2, list(range(20, 30))) assert subg_n1.num_edges() == subg1.num_edges() assert subg_n2.num_edges() == subg2.num_edges() # test homogeneous edge subgraph sg_e = dgl.edge_subgraph(bg, list(range(40, 70)) + list(range(150, 200)), relabel_nodes=False) induced_nodes = F.arange(0, bg.num_nodes(), idtype) induced_edges = sg_e.edata['_ID'] new_batch_num_nodes = _get_subgraph_batch_info(bg.ntypes, [induced_nodes], batch_num_nodes) new_batch_num_edges = _get_subgraph_batch_info(bg.canonical_etypes, [induced_edges], batch_num_edges) sg_e.set_batch_num_nodes(new_batch_num_nodes) sg_e.set_batch_num_edges(new_batch_num_edges) subg_e1, subg_e2 = dgl.unbatch(sg_e) subg1 = dgl.edge_subgraph(g1, list(range(40, 70)), relabel_nodes=False) subg2 = dgl.edge_subgraph(g2, list(range(50, 100)), relabel_nodes=False) assert subg_e1.num_nodes() == subg1.num_nodes() assert subg_e2.num_nodes() == subg2.num_nodes() if __name__ == '__main__': #test_batch_unbatch() #test_batch_unbatch1() #test_batch_unbatch_frame() #test_batch_unbatch2() #test_batched_edge_ordering() #test_batch_send_then_recv() #test_batch_send_and_recv() #test_batch_propagate() #test_batch_no_edge() test_set_batch_info(F.int32)