import torch as th import torch.optim as optim import torch.nn.functional as F import torch.nn as nn import dgl import dgl.function as fn from utils import ccorr class CompGraphConv(nn.Module): """One layer of CompGCN.""" def __init__(self, in_dim, out_dim, comp_fn='sub', batchnorm=True, dropout=0.1): super(CompGraphConv, self).__init__() self.in_dim = in_dim self.out_dim = out_dim self.comp_fn = comp_fn self.actvation = th.tanh self.batchnorm = batchnorm # define dropout layer self.dropout = nn.Dropout(dropout) # define batch norm layer if self.batchnorm: self.bn = nn.BatchNorm1d(out_dim) # define in/out/loop transform layer self.W_O = nn.Linear(self.in_dim, self.out_dim) self.W_I = nn.Linear(self.in_dim, self.out_dim) self.W_S = nn.Linear(self.in_dim, self.out_dim) # define relation transform layer self.W_R = nn.Linear(self.in_dim, self.out_dim) #self loop embedding self.loop_rel = nn.Parameter(th.Tensor(1, self.in_dim)) nn.init.xavier_normal_(self.loop_rel) def forward(self, g, n_in_feats, r_feats): with g.local_scope(): # Assign values to source nodes. In a homogeneous graph, this is equal to # assigning them to all nodes. g.srcdata['h'] = n_in_feats #append loop_rel embedding to r_feats r_feats = th.cat((r_feats, self.loop_rel), 0) # Assign features to all edges with the corresponding relation embeddings g.edata['h'] = r_feats[g.edata['etype']] * g.edata['norm'] # Compute composition function in 4 steps # Step 1: compute composition by edge in the edge direction, and store results in edges. if self.comp_fn == 'sub': g.apply_edges(fn.u_sub_e('h', 'h', out='comp_h')) elif self.comp_fn == 'mul': g.apply_edges(fn.u_mul_e('h', 'h', out='comp_h')) elif self.comp_fn == 'ccorr': g.apply_edges(lambda edges: {'comp_h': ccorr(edges.src['h'], edges.data['h'])}) else: raise Exception('Only supports sub, mul, and ccorr') # Step 2: use extracted edge direction to compute in and out edges comp_h = g.edata['comp_h'] in_edges_idx = th.nonzero(g.edata['in_edges_mask'], as_tuple=False).squeeze() out_edges_idx = th.nonzero(g.edata['out_edges_mask'], as_tuple=False).squeeze() comp_h_O = self.W_O(comp_h[out_edges_idx]) comp_h_I = self.W_I(comp_h[in_edges_idx]) new_comp_h = th.zeros(comp_h.shape[0], self.out_dim).to(comp_h.device) new_comp_h[out_edges_idx] = comp_h_O new_comp_h[in_edges_idx] = comp_h_I g.edata['new_comp_h'] = new_comp_h # Step 3: sum comp results to both src and dst nodes g.update_all(fn.copy_e('new_comp_h', 'm'), fn.sum('m', 'comp_edge')) # Step 4: add results of self-loop if self.comp_fn == 'sub': comp_h_s = n_in_feats - r_feats[-1] elif self.comp_fn == 'mul': comp_h_s = n_in_feats * r_feats[-1] elif self.comp_fn == 'ccorr': comp_h_s = ccorr(n_in_feats, r_feats[-1]) else: raise Exception('Only supports sub, mul, and ccorr') # Sum all of the comp results as output of nodes and dropout n_out_feats = (self.W_S(comp_h_s) + self.dropout(g.ndata['comp_edge'])) * (1/3) # Compute relation output r_out_feats = self.W_R(r_feats) # Batch norm if self.batchnorm: n_out_feats = self.bn(n_out_feats) # Activation function if self.actvation is not None: n_out_feats = self.actvation(n_out_feats) return n_out_feats, r_out_feats[:-1] class CompGCN(nn.Module): def __init__(self, num_bases, num_rel, num_ent, in_dim=100, layer_size=[200], comp_fn='sub', batchnorm=True, dropout=0.1, layer_dropout=[0.3]): super(CompGCN, self).__init__() self.num_bases = num_bases self.num_rel = num_rel self.num_ent = num_ent self.in_dim = in_dim self.layer_size = layer_size self.comp_fn = comp_fn self.batchnorm = batchnorm self.dropout = dropout self.layer_dropout = layer_dropout self.num_layer = len(layer_size) #CompGCN layers self.layers = nn.ModuleList() self.layers.append( CompGraphConv(self.in_dim, self.layer_size[0], comp_fn = self.comp_fn, batchnorm=self.batchnorm, dropout=self.dropout) ) for i in range(self.num_layer-1): self.layers.append( CompGraphConv(self.layer_size[i], self.layer_size[i+1], comp_fn = self.comp_fn, batchnorm=self.batchnorm, dropout=self.dropout) ) #Initial relation embeddings if self.num_bases > 0: self.basis = nn.Parameter(th.Tensor(self.num_bases, self.in_dim)) self.weights = nn.Parameter(th.Tensor(self.num_rel, self.num_bases)) nn.init.xavier_normal_(self.basis) nn.init.xavier_normal_(self.weights) else: self.rel_embds = nn.Parameter(th.Tensor(self.num_rel, self.in_dim)) nn.init.xavier_normal_(self.rel_embds) #Node embeddings self.n_embds = nn.Parameter(th.Tensor(self.num_ent, self.in_dim)) nn.init.xavier_normal_(self.n_embds) #Dropout after compGCN layers self.dropouts = nn.ModuleList() for i in range(self.num_layer): self.dropouts.append( nn.Dropout(self.layer_dropout[i]) ) def forward(self, graph): #node and relation features n_feats = self.n_embds if self.num_bases > 0: r_embds = th.mm(self.weights, self.basis) r_feats = r_embds else: r_feats = self.rel_embds for layer, dropout in zip(self.layers, self.dropouts): n_feats, r_feats = layer(graph, n_feats, r_feats) n_feats = dropout(n_feats) return n_feats, r_feats #Use convE as the score function class CompGCN_ConvE(nn.Module): def __init__(self, num_bases, num_rel, num_ent, in_dim, layer_size, comp_fn='sub', batchnorm=True, dropout=0.1, layer_dropout=[0.3], num_filt=200, hid_drop=0.3, feat_drop=0.3, ker_sz=5, k_w=5, k_h=5 ): super(CompGCN_ConvE, self).__init__() self.embed_dim = layer_size[-1] self.hid_drop=hid_drop self.feat_drop=feat_drop self.ker_sz=ker_sz self.k_w=k_w self.k_h=k_h self.num_filt=num_filt #compGCN model to get sub/rel embs self.compGCN_Model = CompGCN(num_bases, num_rel, num_ent, in_dim, layer_size, comp_fn, batchnorm, dropout, layer_dropout) #batchnorms to the combined (sub+rel) emb self.bn0 = th.nn.BatchNorm2d(1) self.bn1 = th.nn.BatchNorm2d(self.num_filt) self.bn2 = th.nn.BatchNorm1d(self.embed_dim) #dropouts and conv module to the combined (sub+rel) emb self.hidden_drop = th.nn.Dropout(self.hid_drop) self.feature_drop = th.nn.Dropout(self.feat_drop) self.m_conv1 = th.nn.Conv2d(1, out_channels=self.num_filt, kernel_size=(self.ker_sz, self.ker_sz), stride=1, padding=0, bias=False) flat_sz_h = int(2 * self.k_w) - self.ker_sz + 1 flat_sz_w = self.k_h - self.ker_sz + 1 self.flat_sz = flat_sz_h * flat_sz_w * self.num_filt self.fc = th.nn.Linear(self.flat_sz, self.embed_dim) #bias to the score self.bias = nn.Parameter(th.zeros(num_ent)) #combine entity embeddings and relation embeddings def concat(self, e1_embed, rel_embed): e1_embed = e1_embed.view(-1, 1, self.embed_dim) rel_embed = rel_embed.view(-1, 1, self.embed_dim) stack_inp = th.cat([e1_embed, rel_embed], 1) stack_inp = th.transpose(stack_inp, 2, 1).reshape((-1, 1, 2 * self.k_w, self.k_h)) return stack_inp def forward(self, graph, sub, rel): #get sub_emb and rel_emb via compGCN n_feats, r_feats = self.compGCN_Model(graph) sub_emb = n_feats[sub, :] rel_emb = r_feats[rel, :] #combine the sub_emb and rel_emb stk_inp = self.concat(sub_emb, rel_emb) #use convE to score the combined emb x = self.bn0(stk_inp) x = self.m_conv1(x) x = self.bn1(x) x = F.relu(x) x = self.feature_drop(x) x = x.view(-1, self.flat_sz) x = self.fc(x) x = self.hidden_drop(x) x = self.bn2(x) x = F.relu(x) #compute score x = th.mm(x, n_feats.transpose(1,0)) #add in bias x += self.bias.expand_as(x) score = th.sigmoid(x) return score