## Distributed training This is an example of training GraphSage in a distributed fashion. Before training, please install some python libs by pip: ``` pip3 install ogb ``` **Requires PyTorch 1.12.0+ to work.** To train GraphSage, it has five steps: ### Step 0: Setup a Distributed File System * You may skip this step if your cluster already has folder(s) synchronized across machines. To perform distributed training, files and codes need to be accessed across multiple machines. A distributed file system would perfectly handle the job (i.e., NFS, Ceph). #### Server side setup Here is an example of how to setup NFS. First, install essential libs on the storage server ``` sudo apt-get install nfs-kernel-server ``` Below we assume the user account is `ubuntu` and we create a directory of `workspace` in the home directory. ``` mkdir -p /home/ubuntu/workspace ``` We assume that the all servers are under a subnet with ip range `192.168.0.0` to `192.168.255.255`. The exports configuration needs to be modifed to ``` sudo vim /etc/exports # add the following line /home/ubuntu/workspace 192.168.0.0/16(rw,sync,no_subtree_check) ``` The server's internal ip can be checked via `ifconfig` or `ip`. If the ip does not begin with `192.168`, then you may use ``` /home/ubuntu/workspace 10.0.0.0/8(rw,sync,no_subtree_check) /home/ubuntu/workspace 172.16.0.0/12(rw,sync,no_subtree_check) ``` Then restart NFS, the setup on server side is finished. ``` sudo systemctl restart nfs-kernel-server ``` For configraution details, please refer to [NFS ArchWiki](https://wiki.archlinux.org/index.php/NFS). #### Client side setup To use NFS, clients also require to install essential packages ``` sudo apt-get install nfs-common ``` You can either mount the NFS manually ``` mkdir -p /home/ubuntu/workspace sudo mount -t nfs :/home/ubuntu/workspace /home/ubuntu/workspace ``` or edit the fstab so the folder will be mounted automatically ``` # vim /etc/fstab ## append the following line to the file :/home/ubuntu/workspace /home/ubuntu/workspace nfs defaults 0 0 ``` Then run `mount -a`. Now go to `/home/ubuntu/workspace` and clone the DGL Github repository. ### Step 1: set IP configuration file. User need to set their own IP configuration file `ip_config.txt` before training. For example, if we have four machines in current cluster, the IP configuration could like this: ``` 172.31.19.1 172.31.23.205 172.31.29.175 172.31.16.98 ``` Users need to make sure that the master node (node-0) has right permission to ssh to all the other nodes without password authentication. [This link](https://linuxize.com/post/how-to-setup-passwordless-ssh-login/) provides instructions of setting passwordless SSH login. ### Step 2: partition the graph. The example provides a script to partition some builtin graphs such as Reddit and OGB product graph. If we want to train GraphSage on 4 machines, we need to partition the graph into 4 parts. In this example, we partition the ogbn-products graph into 4 parts with Metis on node-0. The partitions are balanced with respect to the number of nodes, the number of edges and the number of labelled nodes. ``` python3 partition_graph.py --dataset ogbn-products --num_parts 4 --balance_train --balance_edges ``` This script generates partitioned graphs and store them in the directory called `data`. ### Step 3: Launch distributed jobs DGL provides a script to launch the training job in the cluster. `part_config` and `ip_config` specify relative paths to the path of the workspace. The command below launches one process per machine for both sampling and training. ``` python3 ~/workspace/dgl/tools/launch.py \ --workspace ~/workspace/dgl/examples/pytorch/graphsage/dist/ \ --num_trainers 1 \ --num_samplers 0 \ --num_servers 1 \ --part_config data/ogbn-products.json \ --ip_config ip_config.txt \ "python3 node_classification.py --graph_name ogbn-products --ip_config ip_config.txt --num_epochs 30 --batch_size 1000" ``` By default, this code will run on CPU. If you have GPU support, you can just add a `--num_gpus` argument in user command: ``` python3 ~/workspace/dgl/tools/launch.py \ --workspace ~/workspace/dgl/examples/pytorch/graphsage/dist/ \ --num_trainers 4 \ --num_samplers 0 \ --num_servers 1 \ --part_config data/ogbn-products.json \ --ip_config ip_config.txt \ "python3 node_classification.py --graph_name ogbn-products --ip_config ip_config.txt --num_epochs 30 --batch_size 1000 --num_gpus 4" ```