{ "cells": [ { "cell_type": "code", "execution_count": 52, "metadata": {}, "outputs": [ { "name": "stdout", "output_type": "stream", "text": [ "Populating the interactive namespace from numpy and matplotlib\n" ] } ], "source": [ "%pylab inline\n", "import networkx as nx\n", "import torch\n", "\n", "import torch.nn.functional as F\n", "import torch_geometric.transforms as T\n", "from torch_geometric.data import Data\n", "from torch_geometric.nn import GCNConv" ] }, { "cell_type": "code", "execution_count": 53, "metadata": {}, "outputs": [], "source": [ "edges=np.loadtxt(\"edges.txt\",dtype=np.int32)\n", "nodes=np.loadtxt(\"nodes.txt\",dtype=np.int32)\n", "G=nx.Graph()\n", "\n", "for i in range(4):\n", " G.add_nodes_from(nodes[nodes[:,1]==i][:,0],labels=i)\n", "G.add_edges_from(edges)" ] }, { "cell_type": "code", "execution_count": 54, "metadata": {}, "outputs": [], "source": [ "nodes=G.nodes(data=True)\n", "values=[]\n", "for i in range(1,G.number_of_nodes()+1):\n", " values.append(nodes[i]['labels'])\n", "edge_index=torch.from_numpy(np.array(G.edges()))\n", "y=torch.from_numpy(np.array(values))\n", "x=torch.eye(G.number_of_nodes())" ] }, { "cell_type": "code", "execution_count": 55, "metadata": {}, "outputs": [], "source": [ "data = Data(x=x, edge_index=edge_index,y=y)" ] }, { "cell_type": "code", "execution_count": 56, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "Data(edge_index=[77, 2], x=[34, 34], y=[34])" ] }, "execution_count": 56, "metadata": {}, "output_type": "execute_result" } ], "source": [ "data" ] }, { "cell_type": "code", "execution_count": 57, "metadata": {}, "outputs": [ { "data": { "text/plain": [ "tensor([0, 0, 0, 0, 1, 1, 1, 0, 0, 0, 1, 0, 0, 0, 0, 0, 1, 0, 0, 0, 0, 0, 0, 0,\n", " 0, 0, 0, 0, 0, 0, 0, 0, 0, 0], dtype=torch.uint8)" ] }, "execution_count": 57, "metadata": {}, "output_type": "execute_result" } ], "source": [ "data.y==0" ] }, { "cell_type": "code", "execution_count": 60, "metadata": {}, "outputs": [], "source": [ "class Net(torch.nn.Module):\n", " def __init__(self):\n", " super(Net, self).__init__()\n", " self.module=torch.nn.Sequential(\n", " GCNConv(data.num_features, 16),\n", " torch.nn.ReLU(),\n", " GCNConv(16, data.num_classes),\n", " torch.nn.LogSoftmax(dim=1)\n", " )\n", " def forward(self, data):\n", " return self.module((data.x, data.edge_index)\n" ] }, { "cell_type": "code", "execution_count": 41, "metadata": {}, "outputs": [], "source": [ "device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')\n" ] }, { "cell_type": "code", "execution_count": 42, "metadata": {}, "outputs": [ { "ename": "RuntimeError", "evalue": "cuda runtime error (59) : device-side assert triggered at /pytorch/aten/src/THC/generic/THCTensorCopy.cpp:20", "output_type": "error", "traceback": [ "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", "\u001b[0;31mRuntimeError\u001b[0m Traceback (most recent call last)", "\u001b[0;32m\u001b[0m in \u001b[0;36m\u001b[0;34m()\u001b[0m\n\u001b[0;32m----> 1\u001b[0;31m \u001b[0mdata\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mto\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mdevice\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m", "\u001b[0;32m~/.pyenv/versions/3.6.1/lib/python3.6/site-packages/torch_geometric/data/data.py\u001b[0m in \u001b[0;36mto\u001b[0;34m(self, device, *keys)\u001b[0m\n\u001b[1;32m 102\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 103\u001b[0m \u001b[0;32mdef\u001b[0m \u001b[0mto\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mdevice\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m*\u001b[0m\u001b[0mkeys\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 104\u001b[0;31m \u001b[0;32mreturn\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mapply\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;32mlambda\u001b[0m \u001b[0mx\u001b[0m\u001b[0;34m:\u001b[0m \u001b[0mx\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mto\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mdevice\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m*\u001b[0m\u001b[0mkeys\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 105\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 106\u001b[0m \u001b[0;32mdef\u001b[0m \u001b[0m__repr__\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", "\u001b[0;32m~/.pyenv/versions/3.6.1/lib/python3.6/site-packages/torch_geometric/data/data.py\u001b[0m in \u001b[0;36mapply\u001b[0;34m(self, func, *keys)\u001b[0m\n\u001b[1;32m 95\u001b[0m \u001b[0;32mdef\u001b[0m \u001b[0mapply\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mfunc\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m*\u001b[0m\u001b[0mkeys\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 96\u001b[0m \u001b[0;32mfor\u001b[0m \u001b[0mkey\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mitem\u001b[0m \u001b[0;32min\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m*\u001b[0m\u001b[0mkeys\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m---> 97\u001b[0;31m \u001b[0mself\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0mkey\u001b[0m\u001b[0;34m]\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mfunc\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mitem\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 98\u001b[0m \u001b[0;32mreturn\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 99\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n", "\u001b[0;32m~/.pyenv/versions/3.6.1/lib/python3.6/site-packages/torch_geometric/data/data.py\u001b[0m in \u001b[0;36m\u001b[0;34m(x)\u001b[0m\n\u001b[1;32m 102\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 103\u001b[0m \u001b[0;32mdef\u001b[0m \u001b[0mto\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mdevice\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m*\u001b[0m\u001b[0mkeys\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 104\u001b[0;31m \u001b[0;32mreturn\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mapply\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;32mlambda\u001b[0m \u001b[0mx\u001b[0m\u001b[0;34m:\u001b[0m \u001b[0mx\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mto\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mdevice\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m*\u001b[0m\u001b[0mkeys\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m 105\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m 106\u001b[0m \u001b[0;32mdef\u001b[0m \u001b[0m__repr__\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mself\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n", "\u001b[0;31mRuntimeError\u001b[0m: cuda runtime error (59) : device-side assert triggered at /pytorch/aten/src/THC/generic/THCTensorCopy.cpp:20" ] } ], "source": [ "data.to(device)" ] }, { "cell_type": "code", "execution_count": 22, "metadata": {}, "outputs": [ { "ename": "RuntimeError", "evalue": "cuda runtime error (59) : device-side assert triggered at /pytorch/aten/src/THC/generic/THCTensorCopy.cpp:20", "output_type": "error", "traceback": [ "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", "\u001b[0;31mRuntimeError\u001b[0m Traceback (most recent call last)", "\u001b[0;32m\u001b[0m in \u001b[0;36m\u001b[0;34m()\u001b[0m\n\u001b[1;32m 1\u001b[0m \u001b[0mdevice\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mtorch\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mdevice\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m'cuda'\u001b[0m \u001b[0;32mif\u001b[0m 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"Expected object of type torch.FloatTensor but found type torch.cuda.FloatTensor for argument #2 'mat2'", "output_type": "error", "traceback": [ "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m", "\u001b[0;31mRuntimeError\u001b[0m Traceback (most recent call last)", "\u001b[0;32m\u001b[0m in \u001b[0;36m\u001b[0;34m()\u001b[0m\n\u001b[0;32m----> 1\u001b[0;31m \u001b[0moutput\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0mmodel\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mdata\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m", "\u001b[0;32m~/.pyenv/versions/3.6.1/lib/python3.6/site-packages/torch/nn/modules/module.py\u001b[0m in \u001b[0;36m__call__\u001b[0;34m(self, *input, **kwargs)\u001b[0m\n\u001b[1;32m 475\u001b[0m \u001b[0mresult\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mself\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0m_slow_forward\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m*\u001b[0m\u001b[0minput\u001b[0m\u001b[0;34m,\u001b[0m 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argument #2 'mat2'" ] } ], "source": [ "output=model(data)" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [ "for epoch in range(1, 101):\n", " output=model(data)" ] }, { "cell_type": "code", "execution_count": null, "metadata": {}, "outputs": [], "source": [] } ], "metadata": { "kernelspec": { "display_name": "Python 3.6", "language": "python", "name": "python3" }, "language_info": { "codemirror_mode": { "name": "ipython", "version": 3 }, "file_extension": ".py", "mimetype": "text/x-python", "name": "python", "nbconvert_exporter": "python", "pygments_lexer": "ipython3", "version": "3.6.1" } }, "nbformat": 4, "nbformat_minor": 2 }