""" This code was modified from the GCN implementation in DGL examples. Simplifying Graph Convolutional Networks Paper: https://arxiv.org/abs/1902.07153 Code: https://github.com/Tiiiger/SGC SGC implementation in DGL. """ import argparse, time, math import numpy as np import torch import torch.nn as nn import torch.nn.functional as F import dgl.function as fn from dgl import DGLGraph from dgl.data import register_data_args, load_data from dgl.nn.pytorch.conv import SGConv def normalize(h): return (h-h.mean(0))/h.std(0) def evaluate(model, features, graph, labels, mask): model.eval() with torch.no_grad(): logits = model(graph, features)[mask] # only compute the evaluation set labels = labels[mask] _, indices = torch.max(logits, dim=1) correct = torch.sum(indices == labels) return correct.item() * 1.0 / len(labels) def main(args): # load and preprocess dataset args.dataset = "reddit-self-loop" data = load_data(args) features = torch.FloatTensor(data.features) labels = torch.LongTensor(data.labels) train_mask = torch.ByteTensor(data.train_mask) val_mask = torch.ByteTensor(data.val_mask) test_mask = torch.ByteTensor(data.test_mask) in_feats = features.shape[1] n_classes = data.num_labels n_edges = data.graph.number_of_edges() print("""----Data statistics------' #Edges %d #Classes %d #Train samples %d #Val samples %d #Test samples %d""" % (n_edges, n_classes, train_mask.sum().item(), val_mask.sum().item(), test_mask.sum().item())) if args.gpu < 0: cuda = False else: cuda = True torch.cuda.set_device(args.gpu) features = features.cuda() labels = labels.cuda() train_mask = train_mask.cuda() val_mask = val_mask.cuda() test_mask = test_mask.cuda() # graph preprocess and calculate normalization factor g = DGLGraph(data.graph) n_edges = g.number_of_edges() # normalization degs = g.in_degrees().float() norm = torch.pow(degs, -0.5) norm[torch.isinf(norm)] = 0 if cuda: norm = norm.cuda() g.ndata['norm'] = norm.unsqueeze(1) # create SGC model model = SGConv(in_feats, n_classes, k=2, cached=True, bias=True, norm=normalize) if args.gpu >= 0: model = model.cuda() # use optimizer optimizer = torch.optim.LBFGS(model.parameters()) # define loss closure def closure(): optimizer.zero_grad() output = model(g, features)[train_mask] loss_train = F.cross_entropy(output, labels[train_mask]) loss_train.backward() return loss_train # initialize graph for epoch in range(args.n_epochs): model.train() optimizer.step(closure) acc = evaluate(model, features, g, labels, test_mask) print("Test Accuracy {:.4f}".format(acc)) if __name__ == '__main__': parser = argparse.ArgumentParser(description='SGC') register_data_args(parser) parser.add_argument("--gpu", type=int, default=-1, help="gpu") parser.add_argument("--bias", action='store_true', default=False, help="flag to use bias") parser.add_argument("--n-epochs", type=int, default=2, help="number of training epochs") args = parser.parse_args() print(args) main(args)