## Distributed training This is an example of training RGCN node classification in a distributed fashion. Currently, the example train RGCN graphs with input node features. Before training, install python libs by pip: ```bash pip3 install ogb pyarrow ``` To train RGCN, it has four steps: ### Step 0: Setup a Distributed File System * You may skip this step if your cluster already has folder(s) synchronized across machines. To perform distributed training, files and codes need to be accessed across multiple machines. A distributed file system would perfectly handle the job (i.e., NFS, Ceph). #### Server side setup Here is an example of how to setup NFS. First, install essential libs on the storage server ```bash sudo apt-get install nfs-kernel-server ``` Below we assume the user account is `ubuntu` and we create a directory of `workspace` in the home directory. ```bash mkdir -p /home/ubuntu/workspace ``` We assume that the all servers are under a subnet with ip range `192.168.0.0` to `192.168.255.255`. The exports configuration needs to be modifed to ```bash sudo vim /etc/exports # add the following line /home/ubuntu/workspace 192.168.0.0/16(rw,sync,no_subtree_check) ``` The server's internal ip can be checked via `ifconfig` or `ip`. If the ip does not begin with `192.168`, then you may use ```bash # for ip range 10.0.0.0 - 10.255.255.255 /home/ubuntu/workspace 10.0.0.0/8(rw,sync,no_subtree_check) # for ip range 172.16.0.0 - 172.31.255.255 /home/ubuntu/workspace 172.16.0.0/12(rw,sync,no_subtree_check) ``` Then restart NFS, the setup on server side is finished. ``` sudo systemctl restart nfs-kernel-server ``` For configraution details, please refer to [NFS ArchWiki](https://wiki.archlinux.org/index.php/NFS). #### Client side setup To use NFS, clients also require to install essential packages ``` sudo apt-get install nfs-common ``` You can either mount the NFS manually ``` mkdir -p /home/ubuntu/workspace sudo mount -t nfs :/home/ubuntu/workspace /home/ubuntu/workspace ``` or edit the fstab so the folder will be mounted automatically ``` # vim /etc/fstab ## append the following line to the file :/home/ubuntu/workspace /home/ubuntu/workspace nfs defaults 0 0 ``` Then run `mount -a`. Now go to `/home/ubuntu/workspace` and clone the DGL Github repository. ### Step 1: set IP configuration file. User need to set their own IP configuration file `ip_config.txt` before training. For example, if we have four machines in current cluster, the IP configuration could like this: ```bash 172.31.0.1 172.31.0.2 ``` Users need to make sure that the master node (node-0) has right permission to ssh to all the other nodes without password authentication. [This link](https://linuxize.com/post/how-to-setup-passwordless-ssh-login/) provides instructions of setting passwordless SSH login. ### Step 2: partition the graph. The example provides a script to partition some builtin graphs such as ogbn-mag graph. If we want to train RGCN on 2 machines, we need to partition the graph into 2 parts. In this example, we partition the ogbn-mag graph into 2 parts with Metis. The partitions are balanced with respect to the number of nodes, the number of edges and the number of labelled nodes. ```bash python3 partition_graph.py --dataset ogbn-mag --num_parts 2 --balance_train --balance_edges ``` If we want to train RGCN with `GraphBolt`, we need to append `--use_graphbolt` to generate partitions in `GraphBolt` format. ```bash python3 partition_graph.py --dataset ogbn-mag --num_parts 2 --balance_train --balance_edges --use_graphbolt ``` ### Step 3: Launch distributed jobs DGL provides a script to launch the training job in the cluster. `part_config` and `ip_config` specify relative paths to the path of the workspace. The command below launches 4 training processes on each machine as we'd like to utilize 4 GPUs for training. ```bash python3 ~/workspace/dgl/tools/launch.py \ --workspace ~/workspace/dgl/examples/pytorch/rgcn/experimental/ \ --num_trainers 4 \ --num_servers 2 \ --num_samplers 0 \ --part_config data/ogbn-mag.json \ --ip_config ip_config.txt \ "python3 entity_classify_dist.py --graph-name ogbn-mag --dataset ogbn-mag --fanout='25,25' --batch-size 1024 --n-hidden 64 --lr 0.01 --eval-batch-size 1024 --low-mem --dropout 0.5 --use-self-loop --n-bases 2 --n-epochs 3 --layer-norm --ip-config ip_config.txt --num_gpus 4" ``` If we want to train RGCN with `GraphBolt`, we need to append `--use_graphbolt`. ```bash python3 ~/workspace/dgl/tools/launch.py \ --workspace ~/workspace/dgl/examples/pytorch/rgcn/experimental/ \ --num_trainers 4 \ --num_servers 2 \ --num_samplers 0 \ --part_config data/ogbn-mag.json \ --ip_config ip_config.txt \ "python3 entity_classify_dist.py --graph-name ogbn-mag --dataset ogbn-mag --fanout='25,25' --batch-size 1024 --n-hidden 64 --lr 0.01 --eval-batch-size 1024 --low-mem --dropout 0.5 --use-self-loop --n-bases 2 --n-epochs 3 --layer-norm --ip-config ip_config.txt --num_gpus 4 --use_graphbolt" ``` **Note:** if you are using conda or other virtual environments on the remote machines, you need to replace `python3` in the command string (i.e. the last argument) with the path to the Python interpreter in that environment. ## Comparison between `DGL` and `GraphBolt` ### Partition sizes Compared to `DGL`, `GraphBolt` partitions are reduced to **19%** for `ogbn-mag`. `ogbn-mag` | Data Formats | File Name | Part 0 | Part 1 | | ------------ | ---------------------------- | ------ | ------ | | DGL | graph.dgl | 714MB | 716MB | | GraphBolt | fused_csc_sampling_graph.pt | 137MB | 136MB | ### Performance Compared to `DGL`, `GraphBolt`'s sampler works faster(reduced to **16%** `ogbn-mag`). `Min` and `Max` are statistics of all trainers on all nodes(machines). As for RAM usage, the shared memory(measured by **shared** field of `free` command) usage decreases due to smaller graph partitions in `GraphBolt`. The peak memory used by processes(measured by **used** field of `free` command) decreases as well. `ogbn-mag` | Data Formats | Sample Time Per Epoch (CPU) | Test Accuracy (3 epochs) | shared | used (peak) | | ------------ | --------------------------- | ------------------------- | ----- | ---- | | DGL | Min: 48.2s, Max: 91.4s | 42.76% | 1.3GB | 9.2GB| | GraphBolt | Min: 9.2s, Max: 11.9s | 42.46% | 742MB | 5.9GB|