import argparse import time import dgl import numpy as np import torch import torch.nn as nn import torch.nn.functional as F from appnp import APPNP from dgl.data import ( CiteseerGraphDataset, CoraGraphDataset, PubmedGraphDataset, register_data_args, ) def evaluate(model, features, labels, mask): model.eval() with torch.no_grad(): logits = model(features) logits = logits[mask] labels = labels[mask] _, indices = torch.max(logits, dim=1) correct = torch.sum(indices == labels) return correct.item() * 1.0 / len(labels) def main(args): # load and preprocess dataset if args.dataset == "cora": data = CoraGraphDataset() elif args.dataset == "citeseer": data = CiteseerGraphDataset() elif args.dataset == "pubmed": data = PubmedGraphDataset() else: raise ValueError("Unknown dataset: {}".format(args.dataset)) g = data[0] if args.gpu < 0: cuda = False else: cuda = True g = g.to(args.gpu) features = g.ndata["feat"] labels = g.ndata["label"] train_mask = g.ndata["train_mask"] val_mask = g.ndata["val_mask"] test_mask = g.ndata["test_mask"] in_feats = features.shape[1] n_classes = data.num_labels n_edges = g.number_of_edges() print( """----Data statistics------' #Edges %d #Classes %d #Train samples %d #Val samples %d #Test samples %d""" % ( n_edges, n_classes, train_mask.int().sum().item(), val_mask.int().sum().item(), test_mask.int().sum().item(), ) ) n_edges = g.number_of_edges() # add self loop g = dgl.remove_self_loop(g) g = dgl.add_self_loop(g) # create APPNP model model = APPNP( g, in_feats, args.hidden_sizes, n_classes, F.relu, args.in_drop, args.edge_drop, args.alpha, args.k, ) if cuda: model.cuda() loss_fcn = torch.nn.CrossEntropyLoss() # use optimizer optimizer = torch.optim.Adam( model.parameters(), lr=args.lr, weight_decay=args.weight_decay ) # initialize graph dur = [] for epoch in range(args.n_epochs): model.train() if epoch >= 3: t0 = time.time() # forward logits = model(features) loss = loss_fcn(logits[train_mask], labels[train_mask]) optimizer.zero_grad() loss.backward() optimizer.step() if epoch >= 3: dur.append(time.time() - t0) acc = evaluate(model, features, labels, val_mask) print( "Epoch {:05d} | Time(s) {:.4f} | Loss {:.4f} | Accuracy {:.4f} | " "ETputs(KTEPS) {:.2f}".format( epoch, np.mean(dur), loss.item(), acc, n_edges / np.mean(dur) / 1000, ) ) print() acc = evaluate(model, features, labels, test_mask) print("Test Accuracy {:.4f}".format(acc)) if __name__ == "__main__": parser = argparse.ArgumentParser(description="APPNP") register_data_args(parser) parser.add_argument( "--in-drop", type=float, default=0.5, help="input feature dropout" ) parser.add_argument( "--edge-drop", type=float, default=0.5, help="edge propagation dropout" ) parser.add_argument("--gpu", type=int, default=-1, help="gpu") parser.add_argument("--lr", type=float, default=1e-2, help="learning rate") parser.add_argument( "--n-epochs", type=int, default=200, help="number of training epochs" ) parser.add_argument( "--hidden_sizes", type=int, nargs="+", default=[64], help="hidden unit sizes for appnp", ) parser.add_argument( "--k", type=int, default=10, help="Number of propagation steps" ) parser.add_argument( "--alpha", type=float, default=0.1, help="Teleport Probability" ) parser.add_argument( "--weight-decay", type=float, default=5e-4, help="Weight for L2 loss" ) args = parser.parse_args() print(args) main(args)