import networkx as nx import dgl import torch import numpy as np def tree1(): """Generate a tree 0 / \ 1 2 / \ 3 4 Edges are from leaves to root. """ g = dgl.DGLGraph() g.add_node(0) g.add_node(1) g.add_node(2) g.add_node(3) g.add_node(4) g.add_edge(3, 1) g.add_edge(4, 1) g.add_edge(1, 0) g.add_edge(2, 0) g.set_n_repr(torch.Tensor([0, 1, 2, 3, 4])) return g def tree2(): """Generate a tree 1 / \ 4 3 / \ 2 0 Edges are from leaves to root. """ g = dgl.DGLGraph() g.add_node(0) g.add_node(1) g.add_node(2) g.add_node(3) g.add_node(4) g.add_edge(2, 4) g.add_edge(0, 4) g.add_edge(4, 1) g.add_edge(3, 1) g.set_n_repr(torch.Tensor([0, 1, 2, 3, 4])) return g def test_batch_unbatch(): t1 = tree1() t2 = tree2() f1 = t1.get_n_repr() f2 = t2.get_n_repr() bg = dgl.batch([t1, t2]) dgl.unbatch(bg) assert(f1.equal(t1.get_n_repr())) assert(f2.equal(t2.get_n_repr())) def test_batch_sendrecv(): t1 = tree1() t2 = tree2() bg = dgl.batch([t1, t2]) bg.register_message_func(lambda src, edge: src, batchable=True) bg.register_reduce_func(lambda node, msgs: torch.sum(msgs, 1), batchable=True) bg.register_update_func(lambda node, accum: accum, batchable=True) e1 = [(3, 1), (4, 1)] e2 = [(2, 4), (0, 4)] u1, v1 = bg.query_new_edge(t1, *zip(*e1)) u2, v2 = bg.query_new_edge(t2, *zip(*e2)) u = np.concatenate((u1, u2)).tolist() v = np.concatenate((v1, v2)).tolist() bg.sendto(u, v) bg.recv(v) dgl.unbatch(bg) assert t1.get_n_repr()[1] == 7 assert t2.get_n_repr()[4] == 2 def test_batch_propagate(): t1 = tree1() t2 = tree2() bg = dgl.batch([t1, t2]) bg.register_message_func(lambda src, edge: src, batchable=True) bg.register_reduce_func(lambda node, msgs: torch.sum(msgs, 1), batchable=True) bg.register_update_func(lambda node, accum: accum, batchable=True) # get leaves. order = [] # step 1 e1 = [(3, 1), (4, 1)] e2 = [(2, 4), (0, 4)] u1, v1 = bg.query_new_edge(t1, *zip(*e1)) u2, v2 = bg.query_new_edge(t2, *zip(*e2)) u = np.concatenate((u1, u2)).tolist() v = np.concatenate((v1, v2)).tolist() order.append((u, v)) # step 2 e1 = [(1, 0), (2, 0)] e2 = [(4, 1), (3, 1)] u1, v1 = bg.query_new_edge(t1, *zip(*e1)) u2, v2 = bg.query_new_edge(t2, *zip(*e2)) u = np.concatenate((u1, u2)).tolist() v = np.concatenate((v1, v2)).tolist() order.append((u, v)) bg.propagate(iterator=order) dgl.unbatch(bg) assert t1.get_n_repr()[0] == 9 assert t2.get_n_repr()[1] == 5 if __name__ == '__main__': test_batch_unbatch() test_batch_sendrecv() test_batch_propagate()