import argparse import time import numpy as np import networkx as nx import torch import torch.nn as nn import torch.nn.functional as F from dgl import DGLGraph from dgl.data import register_data_args, load_data from dgl.nn.pytorch.conv import GMMConv class MoNet(nn.Module): def __init__(self, g, in_feats, n_hidden, out_feats, n_layers, dim, n_kernels, dropout): super(MoNet, self).__init__() self.g = g self.layers = nn.ModuleList() self.pseudo_proj = nn.ModuleList() # Input layer self.layers.append( GMMConv(in_feats, n_hidden, dim, n_kernels)) self.pseudo_proj.append( nn.Sequential(nn.Linear(2, dim), nn.Tanh())) # Hidden layer for _ in range(n_layers - 1): self.layers.append(GMMConv(n_hidden, n_hidden, dim, n_kernels)) self.pseudo_proj.append( nn.Sequential(nn.Linear(2, dim), nn.Tanh())) # Output layer self.layers.append(GMMConv(n_hidden, out_feats, dim, n_kernels)) self.pseudo_proj.append( nn.Sequential(nn.Linear(2, dim), nn.Tanh())) self.dropout = nn.Dropout(dropout) def forward(self, feat, pseudo): h = feat for i in range(len(self.layers)): if i != 0: h = self.dropout(h) h = self.layers[i]( self.g, h, self.pseudo_proj[i](pseudo)) return h def evaluate(model, features, pseudo, labels, mask): model.eval() with torch.no_grad(): logits = model(features, pseudo) logits = logits[mask] labels = labels[mask] _, indices = torch.max(logits, dim=1) correct = torch.sum(indices == labels) return correct.item() * 1.0 / len(labels) def main(args): # load and preprocess dataset data = load_data(args) features = torch.FloatTensor(data.features) labels = torch.LongTensor(data.labels) if False: #hasattr(torch, 'BoolTensor'): train_mask = torch.BoolTensor(data.train_mask) val_mask = torch.BoolTensor(data.val_mask) test_mask = torch.BoolTensor(data.test_mask) else: train_mask = torch.ByteTensor(data.train_mask) val_mask = torch.ByteTensor(data.val_mask) test_mask = torch.ByteTensor(data.test_mask) in_feats = features.shape[1] n_classes = data.num_labels n_edges = data.graph.number_of_edges() print("""----Data statistics------' #Edges %d #Classes %d #Train samples %d #Val samples %d #Test samples %d""" % (n_edges, n_classes, train_mask.sum().item(), val_mask.sum().item(), test_mask.sum().item())) if args.gpu < 0: cuda = False else: cuda = True torch.cuda.set_device(args.gpu) features = features.cuda() labels = labels.cuda() train_mask = train_mask.cuda() val_mask = val_mask.cuda() test_mask = test_mask.cuda() print("use cuda:", args.gpu) # graph preprocess and calculate normalization factor g = data.graph g.remove_edges_from(nx.selfloop_edges(g)) g = DGLGraph(g) n_edges = g.number_of_edges() us, vs = g.edges() pseudo = [] for i in range(g.number_of_edges()): pseudo.append([ 1 / np.sqrt(g.in_degree(us[i])), 1 / np.sqrt(g.in_degree(vs[i])) ]) pseudo = torch.Tensor(pseudo) if cuda: pseudo = pseudo.cuda() # create GraphSAGE model model = MoNet(g, in_feats, args.n_hidden, n_classes, args.n_layers, args.pseudo_dim, args.n_kernels, args.dropout ) if cuda: model.cuda() loss_fcn = torch.nn.CrossEntropyLoss() # use optimizer optimizer = torch.optim.Adam(model.parameters(), lr=args.lr, weight_decay=args.weight_decay) # initialize graph dur = [] for epoch in range(args.n_epochs): model.train() if epoch >= 3: t0 = time.time() # forward logits = model(features, pseudo) loss = loss_fcn(logits[train_mask], labels[train_mask]) optimizer.zero_grad() loss.backward() optimizer.step() if epoch >= 3: dur.append(time.time() - t0) acc = evaluate(model, features, pseudo, labels, val_mask) print("Epoch {:05d} | Time(s) {:.4f} | Loss {:.4f} | Accuracy {:.4f} | " "ETputs(KTEPS) {:.2f}".format(epoch, np.mean(dur), loss.item(), acc, n_edges / np.mean(dur) / 1000)) print() acc = evaluate(model, features, pseudo, labels, test_mask) print("Test Accuracy {:.4f}".format(acc)) if __name__ == '__main__': parser = argparse.ArgumentParser(description='MoNet on citation network') register_data_args(parser) parser.add_argument("--dropout", type=float, default=0.5, help="dropout probability") parser.add_argument("--gpu", type=int, default=-1, help="gpu") parser.add_argument("--lr", type=float, default=1e-2, help="learning rate") parser.add_argument("--n-epochs", type=int, default=200, help="number of training epochs") parser.add_argument("--n-hidden", type=int, default=16, help="number of hidden gcn units") parser.add_argument("--n-layers", type=int, default=1, help="number of hidden gcn layers") parser.add_argument("--pseudo-dim", type=int, default=2, help="Pseudo coordinate dimensions in GMMConv, 2 for cora and 3 for pubmed") parser.add_argument("--n-kernels", type=int, default=3, help="Number of kernels in GMMConv layer") parser.add_argument("--weight-decay", type=float, default=5e-4, help="Weight for L2 loss") args = parser.parse_args() print(args) main(args)